View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4712_low_1 (Length: 400)
Name: NF4712_low_1
Description: NF4712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4712_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 13 - 380
Target Start/End: Original strand, 27507901 - 27508267
Alignment:
| Q |
13 |
atactcgttgaacatgccttgaatatatatctagagcagattgtaaactataatgacaggagcaaataaggtagaaagggtgaaaagcatgttttgactt |
112 |
Q |
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| T |
27507901 |
atactcgttgaacatgccttgaatatatatctagagcagattgtaaactataatgacaggagcaaataaagcagaaagggtgaaaaacatgttttgactt |
27508000 |
T |
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| Q |
113 |
gtgactgaatcacctcattatagcagtattcataaaaaatattgaaatataaatttaaagaaggaaaacgtgaaatctgtctgtaattggatcacatatt |
212 |
Q |
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| T |
27508001 |
atgactgaatcacctcattatagcagtattcataaaaaatattgaaatataaatttaaagaaggaaaacgtgaaatctgactgtaattggatcacatatt |
27508100 |
T |
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| Q |
213 |
ttgtgacgaataaattagagattccaacaaaaattatcgtnnnnnnnnnntcatggcaattttttcttttccttccacatgacacaatttgatgaaactt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27508101 |
ttgtgacgaataaattagagattccaacaaaaattatcgt-aaaaaaaaatcatggcaattttttcttttccttccacatgacacaatttgatgaaactt |
27508199 |
T |
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| Q |
313 |
atctttctagctcacaaatctggcccaaaggaactaactaactttcagtttttgtagttttatggttg |
380 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27508200 |
atctttctagctcacaaatctggcccaaaggaactaactaactttcagtttttgtagttttatggttg |
27508267 |
T |
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