View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4712_low_6 (Length: 252)

Name: NF4712_low_6
Description: NF4712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4712_low_6
NF4712_low_6
[»] chr1 (16 HSPs)
chr1 (1-199)||(27586058-27586255)
chr1 (84-178)||(49446400-49446492)
chr1 (191-244)||(27622693-27622745)
chr1 (84-153)||(35956381-35956449)
chr1 (84-152)||(10895310-10895377)
chr1 (94-178)||(13792050-13792134)
chr1 (88-155)||(30494050-30494117)
chr1 (84-147)||(34046359-34046422)
chr1 (85-147)||(698870-698932)
chr1 (85-183)||(35508354-35508452)
chr1 (85-150)||(3483037-3483102)
chr1 (2-39)||(16420140-16420177)
chr1 (84-145)||(29523600-29523661)
chr1 (85-149)||(5423790-5423854)
chr1 (110-154)||(5483297-5483341)
chr1 (87-178)||(48872131-48872222)
[»] chr5 (13 HSPs)
chr5 (85-178)||(591268-591361)
chr5 (84-154)||(36486904-36486974)
chr5 (84-177)||(31537666-31537760)
chr5 (84-152)||(543996-544064)
chr5 (85-152)||(27146867-27146934)
chr5 (1-41)||(36681923-36681963)
chr5 (85-152)||(42265431-42265498)
chr5 (91-153)||(5393950-5394012)
chr5 (85-151)||(40872236-40872302)
chr5 (120-178)||(43145812-43145870)
chr5 (85-178)||(13978676-13978769)
chr5 (85-154)||(39046929-39046997)
chr5 (84-152)||(4641493-4641560)
[»] chr7 (13 HSPs)
chr7 (88-178)||(6388000-6388090)
chr7 (88-153)||(30626119-30626184)
chr7 (85-150)||(32490759-32490824)
chr7 (85-152)||(5248677-5248744)
chr7 (84-183)||(17302855-17302954)
chr7 (89-152)||(17883361-17883424)
chr7 (84-182)||(42265376-42265474)
chr7 (85-127)||(26804063-26804105)
chr7 (2-39)||(35393186-35393223)
chr7 (109-174)||(37138689-37138754)
chr7 (85-174)||(47405274-47405363)
chr7 (88-152)||(19914982-19915046)
chr7 (84-176)||(34534829-34534920)
[»] chr8 (13 HSPs)
chr8 (84-151)||(8785326-8785393)
chr8 (88-152)||(38167440-38167504)
chr8 (85-152)||(34336517-34336584)
chr8 (111-178)||(11533201-11533268)
chr8 (87-177)||(37564378-37564468)
chr8 (85-154)||(33650001-33650070)
chr8 (84-133)||(44748573-44748622)
chr8 (85-152)||(44254171-44254238)
chr8 (110-156)||(36782832-36782878)
chr8 (84-152)||(28460035-28460103)
chr8 (88-176)||(39644180-39644269)
chr8 (109-174)||(39691182-39691247)
chr8 (110-178)||(10335092-10335160)
[»] scaffold0062 (1 HSPs)
scaffold0062 (84-152)||(2983-3050)
[»] scaffold0717 (1 HSPs)
scaffold0717 (88-185)||(5008-5105)
[»] scaffold0018 (1 HSPs)
scaffold0018 (110-155)||(67672-67717)
[»] chr6 (4 HSPs)
chr6 (88-133)||(34556160-34556205)
chr6 (84-178)||(34185069-34185163)
chr6 (85-178)||(29407972-29408065)
chr6 (111-154)||(17124638-17124681)
[»] chr3 (8 HSPs)
chr3 (88-153)||(11465672-11465737)
chr3 (85-152)||(32734676-32734743)
chr3 (109-178)||(53433254-53433324)
chr3 (84-154)||(53766736-53766805)
chr3 (88-152)||(4275254-4275318)
chr3 (84-152)||(25299080-25299148)
chr3 (93-149)||(47915007-47915062)
chr3 (84-156)||(50941670-50941742)
[»] scaffold0262 (1 HSPs)
scaffold0262 (87-151)||(17536-17600)
[»] chr4 (14 HSPs)
chr4 (84-183)||(51291050-51291149)
chr4 (93-178)||(46521473-46521558)
chr4 (85-177)||(8607651-8607743)
chr4 (87-151)||(33266866-33266930)
chr4 (110-174)||(49236653-49236716)
chr4 (88-154)||(49979709-49979774)
chr4 (85-152)||(20180267-20180334)
chr4 (110-181)||(24546777-24546847)
chr4 (87-178)||(28695735-28695826)
chr4 (85-152)||(53919863-53919930)
chr4 (85-151)||(2818355-2818421)
chr4 (110-152)||(29899485-29899527)
chr4 (84-153)||(25138970-25139039)
chr4 (85-154)||(46088560-46088629)
[»] chr2 (11 HSPs)
chr2 (84-149)||(45624306-45624373)
chr2 (85-152)||(27501779-27501846)
chr2 (87-178)||(37082247-37082337)
chr2 (85-178)||(5962007-5962102)
chr2 (142-177)||(33634899-33634934)
chr2 (85-152)||(44195502-44195569)
chr2 (84-149)||(26808997-26809063)
chr2 (85-127)||(33962987-33963029)
chr2 (88-157)||(14663227-14663296)
chr2 (111-172)||(18671878-18671938)
chr2 (85-177)||(6761770-6761862)
[»] scaffold0036 (1 HSPs)
scaffold0036 (88-148)||(88236-88296)


Alignment Details
Target: chr1 (Bit Score: 120; Significance: 2e-61; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 27586058 - 27586255
Alignment:
Q  1 taaaagtcaggggaatttttaacgaaagttacaatttcaagannnnnnnnngcctattcactcattttataaaagttcattggttgcattggaaattgaa 100  Q
    |||||||  ||||| ||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||    
T  27586058 taaaagtatggggattttttaacgaaagttacaatttcaag-gttttttttgcctattcactcattttataaaagttcattggttgcattggaaattgaa 27586156  T
Q  101 gttttaatcttttttaaagaataatttattcattaaaaatgcttaaagagtgtctcaaatgcactcgttaacaagaccattttatgaatcatatatata 199  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||| |||||||||| ||||| |||||||| ||||||    
T  27586157 gttttaattttttttaaagaataatttattcattaaaaatacttaaagagtgtcttaaatgtactctttaacaagactattttctgaatcatgtatata 27586255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 84 - 178
Target Start/End: Complemental strand, 49446492 - 49446400
Alignment:
Q  84 ttgcattggaaattgaagttttaatcttttttaaagaataatttattcattaaaaatgcttaaagagtgtctcaaatgcactcgttaacaagacc 178  Q
    |||||||| |||||||||| || || ||||||  | ||||||||||| ||||  |||||||||||||||||| |||  |||||||||||||||||    
T  49446492 ttgcattgaaaattgaagtctttattttttttttaaaataatttattaattaggaatgcttaaagagtgtctgaaa--cactcgttaacaagacc 49446400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 27622693 - 27622745
Alignment:
Q  191 atatatatacaacattatcccttttacaaaaaagaaaagtgattatcctatgct 244  Q
    ||||||||| |  |||||||||||||||||| ||||||||||||||||||||||    
T  27622693 atatatatataggattatcccttttacaaaa-agaaaagtgattatcctatgct 27622745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 84 - 153
Target Start/End: Original strand, 35956381 - 35956449
Alignment:
Q  84 ttgcattggaaattgaagttttaatcttttttaaagaataatttattcattaaaaatgcttaaagagtgt 153  Q
    ||||||| |||||||||||||| |  ||||||||| |||||||| || |||||||||| |||||||||||    
T  35956381 ttgcattagaaattgaagtttttactttttttaaa-aataatttctttattaaaaatgtttaaagagtgt 35956449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 152
Target Start/End: Complemental strand, 10895377 - 10895310
Alignment:
Q  84 ttgcattggaaattgaagttttaatcttttttaaagaataatttattcattaaaaatgcttaaagagtg 152  Q
    |||||||| ||||| |||| ||| | ||||||||||||||| || ||||||||||||| ||||||||||    
T  10895377 ttgcattgaaaattaaagtcttact-ttttttaaagaataacttcttcattaaaaatgtttaaagagtg 10895310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 178
Target Start/End: Original strand, 13792050 - 13792134
Alignment:
Q  94 aattgaagttttaatcttttttaaagaataatttattcattaaaaatgcttaaagagtgtctcaaatgcactcgttaacaagacc 178  Q
    ||||||||| |||| |||||| ||| |||||||| || ||||||||  |||||||||||||| ||   ||||||||| |||||||    
T  13792050 aattgaagtgttaaactttttaaaaaaataattttttaattaaaaaaccttaaagagtgtcttaaggacactcgttagcaagacc 13792134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 155
Target Start/End: Complemental strand, 30494117 - 30494050
Alignment:
Q  88 attggaaattgaagttttaatcttttttaaagaataatttattcattaaaaatgcttaaagagtgtct 155  Q
    |||||||||| |||||||   ||||||||||||||||| | || |||||||||  |||||||||||||    
T  30494117 attggaaattaaagttttttacttttttaaagaataatctctttattaaaaatctttaaagagtgtct 30494050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 147
Target Start/End: Complemental strand, 34046422 - 34046359
Alignment:
Q  84 ttgcattggaaattgaagttttaatcttttttaaagaataatttattcattaaaaatgcttaaa 147  Q
    |||| |||||||||||| | || |  |||||||||||||||||| |||||||||||| ||||||    
T  34046422 ttgctttggaaattgaaatcttcactttttttaaagaataatttcttcattaaaaatacttaaa 34046359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 147
Target Start/End: Original strand, 698870 - 698932
Alignment:
Q  85 tgcattggaaattgaagttttaatcttttttaaagaataatttattcattaaaaatgcttaaa 147  Q
    |||||||||||||  |||||| | ||||||||| ||||||||| || ||||||||| ||||||    
T  698870 tgcattggaaatttgagtttttaacttttttaatgaataatttctttattaaaaatccttaaa 698932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 183
Target Start/End: Complemental strand, 35508452 - 35508354
Alignment:
Q  85 tgcattggaaattgaagttttaatcttttttaaagaataatttattcattaaaaatgcttaaagagtgtctcaaatgcactcgttaacaagaccatttt 183  Q
    |||||||||||||||||| ||||  ||||| |||||||||||| || ||| | ||  | |||||||||||   |  |||||||||||||||| ||||||    
T  35508452 tgcattggaaattgaagtgttaaattttttcaaagaataatttcttaattgagaaaccataaagagtgtcatcagggcactcgttaacaagatcatttt 35508354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 150
Target Start/End: Complemental strand, 3483102 - 3483037
Alignment:
Q  85 tgcattggaaattgaagttttaatcttttttaaagaataatttattcattaaaaatgcttaaagag 150  Q
    ||||||| |||||| ||||||   ||||||||||||||||||| || |||| |||| |||||||||    
T  3483102 tgcattgaaaattggagtttttgacttttttaaagaataatttctttattagaaatccttaaagag 3483037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 39
Target Start/End: Complemental strand, 16420177 - 16420140
Alignment:
Q  2 aaaagtcaggggaatttttaacgaaagttacaatttca 39  Q
    |||| ||||||| |||||||||||||||||||||||||    
T  16420177 aaaattcagggggatttttaacgaaagttacaatttca 16420140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 84 - 145
Target Start/End: Original strand, 29523600 - 29523661
Alignment:
Q  84 ttgcattggaaattgaagttttaatcttttttaaagaataatttattcattaaaaatgctta 145  Q
    |||||||||||||||||||||| | |||||||||| ||| |||| || ||||  ||||||||    
T  29523600 ttgcattggaaattgaagtttttaccttttttaaaaaattatttctttattaggaatgctta 29523661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 149
Target Start/End: Original strand, 5423790 - 5423854
Alignment:
Q  85 tgcattggaaattgaagttttaatcttttttaaagaataatttattcattaaaaatgcttaaaga 149  Q
    ||||||| |||||||| | || | |||||||||||||||||||  | ||| ||||||||||||||    
T  5423790 tgcattgaaaattgaactatttaacttttttaaagaataattttctaatttaaaatgcttaaaga 5423854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 154
Target Start/End: Complemental strand, 5483341 - 5483297
Alignment:
Q  110 ttttttaaagaataatttattcattaaaaatgcttaaagagtgtc 154  Q
    |||||||||||||||||| ||||||| |||| |||||||| ||||    
T  5483341 ttttttaaagaataatttcttcattataaattcttaaagaatgtc 5483297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 178
Target Start/End: Complemental strand, 48872222 - 48872131
Alignment:
Q  87 cattggaaattgaagt-tttaatcttttttaaagaataatttattcattaaaaatgcttaaagagtgtctcaaatgcactcgttaacaagacc 178  Q
    |||||||||||||||| |||||| |||| | || ||||||||||| |||| ||||| ||||| |||| |||   |||||||||||| ||||||    
T  48872222 cattggaaattgaagtctttaattttttgtgaaaaataatttatttattagaaatgtttaaatagtg-ctccggtgcactcgttaataagacc 48872131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 85 - 178
Target Start/End: Original strand, 591268 - 591361
Alignment:
Q  85 tgcattggaaattgaagttttaatcttttttaaagaataatttattcattaaaaatgcttaaagagtgtctcaaatgcactcgttaacaagacc 178  Q
    |||||||||||||||||||||   ||||||||||||||||||| || |||| |||| ||||||||||||||  |  ||||||||||||||||||    
T  591268 tgcattggaaattgaagttttcgacttttttaaagaataatttctttattagaaatccttaaagagtgtctttagggcactcgttaacaagacc 591361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 84 - 154
Target Start/End: Complemental strand, 36486974 - 36486904
Alignment:
Q  84 ttgcattggaaattgaagttttaatcttttttaaagaataatttattcattaaaaatgcttaaagagtgtc 154  Q
    |||||||| |||||||||| || | ||||||||||||||||||| || |||||||||||||||||||||||    
T  36486974 ttgcattgaaaattgaagtcttgaacttttttaaagaataatttctttattaaaaatgcttaaagagtgtc 36486904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 84 - 177
Target Start/End: Complemental strand, 31537760 - 31537666
Alignment:
Q  84 ttgcattggaaattgaagttttaatctttttt-aaagaataatttattcattaaaaatgcttaaagagtgtctcaaatgcactcgttaacaagac 177  Q
    ||||||| ||||||||||| || || |||||| ||||||||||||  |||||||||||| ||||||||||||| | | ||| |||||||||||||    
T  31537760 ttgcattagaaattgaagtctttatgtttttttaaagaataattttctcattaaaaatgtttaaagagtgtcttagaagcattcgttaacaagac 31537666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 84 - 152
Target Start/End: Complemental strand, 544064 - 543996
Alignment:
Q  84 ttgcattggaaattgaagttttaatcttttttaaagaataatttattcattaaaaatgcttaaagagtg 152  Q
    |||| |||||||||||||||||| | ||||||||||||||||||  || ||| ||||||||||||||||    
T  544064 ttgcgttggaaattgaagttttacttttttttaaagaataatttcctcgttagaaatgcttaaagagtg 543996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 152
Target Start/End: Complemental strand, 27146934 - 27146867
Alignment:
Q  85 tgcattggaaattgaagttttaatcttttttaaagaataatttattcattaaaaatgcttaaagagtg 152  Q
    |||||||||||||  |||||| | ||||||||||||||||||| || |||| |||| |||||||||||    
T  27146934 tgcattggaaattagagtttttaacttttttaaagaataatttctttattagaaatccttaaagagtg 27146867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 36681923 - 36681963
Alignment:
Q  1 taaaagtcaggggaatttttaacgaaagttacaatttcaag 41  Q
    ||||| ||||||| |||||||||||||||||||||||||||    
T  36681923 taaaaatcagggggatttttaacgaaagttacaatttcaag 36681963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 152
Target Start/End: Complemental strand, 42265498 - 42265431
Alignment:
Q  85 tgcattggaaattgaagttttaatcttttttaaagaataatttattcattaaaaatgcttaaagagtg 152  Q
    ||||||| |||||||| ||||   ||||||||||||||||||| || ||||| ||| |||||||||||    
T  42265498 tgcattgaaaattgaaatttttgacttttttaaagaataatttttttattaagaatccttaaagagtg 42265431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 153
Target Start/End: Complemental strand, 5394012 - 5393950
Alignment:
Q  91 ggaaattgaagttttaatcttttttaaagaataatttattcattaaaaatgcttaaagagtgt 153  Q
    |||||||||| |||| |  |||||||||||||||||| |||||||  |||||||||| |||||    
T  5394012 ggaaattgaaatttttaatttttttaaagaataattttttcattacgaatgcttaaaaagtgt 5393950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 151
Target Start/End: Complemental strand, 40872302 - 40872236
Alignment:
Q  85 tgcattggaaattgaagttttaatcttttttaaagaataatttattcattaaaaatgcttaaagagt 151  Q
    |||||||||||||| |||||| | | ||||||||||||||||| || |||| || | ||||||||||    
T  40872302 tgcattggaaattggagtttttaacctttttaaagaataatttctttattagaatttcttaaagagt 40872236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 178
Target Start/End: Complemental strand, 43145870 - 43145812
Alignment:
Q  120 aataatttattcattaaaaatgcttaaagagtgtctcaaatgcactcgttaacaagacc 178  Q
    |||||||| ||| || |||||||||||||||||||||| |  | |||||||||||||||    
T  43145870 aataatttcttcttttaaaatgcttaaagagtgtctcagagacgctcgttaacaagacc 43145812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 178
Target Start/End: Original strand, 13978676 - 13978769
Alignment:
Q  85 tgcattggaaattgaagttttaatcttttttaaagaataatttattcattaaaaatgcttaaagagtgtctcaaatgcactcgttaacaagacc 178  Q
    ||||||||||||||||||||| | |||||||||  |||||||| || |||  |||| |||||| |||| ||  |   |||||||||||||||||    
T  13978676 tgcattggaaattgaagtttttaacttttttaagaaataatttctttattggaaatccttaaaaagtgcctttaggacactcgttaacaagacc 13978769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 154
Target Start/End: Complemental strand, 39046997 - 39046929
Alignment:
Q  85 tgcattggaaattgaagttttaatcttttttaaagaataatttattcattaaaaatgcttaaagagtgtc 154  Q
    ||||||| ||||| ||||||| | | ||||||||||||||||| || ||||| ||| |||||||||||||    
T  39046997 tgcattgaaaattaaagtttttaacgtttttaaagaataattt-tttattaagaatccttaaagagtgtc 39046929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 152
Target Start/End: Original strand, 4641493 - 4641560
Alignment:
Q  84 ttgcattggaaattgaagttttaatcttttttaaagaataatttattcattaaaaatgcttaaagagtg 152  Q
    ||||||||||||| ||| | ||   |||||||||| |||||||||||||||| |||| |||||||||||    
T  4641493 ttgcattggaaatcgaaatctttgacttttttaaa-aataatttattcattagaaatccttaaagagtg 4641560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 88 - 178
Target Start/End: Original strand, 6388000 - 6388090
Alignment:
Q  88 attggaaattgaagttttaatcttttttaaagaataatttattcattaaaaatgcttaaagagtgtctcaaatgcactcgttaacaagacc 178  Q
    ||||||||||||||||||   ||||||||||||||||||| || ||||  ||| |||||||||||||| ||| ||||| ||||||||||||    
T  6388000 attggaaattgaagtttttgacttttttaaagaataatttctttattatgaatccttaaagagtgtcttaaaggcacttgttaacaagacc 6388090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 88 - 153
Target Start/End: Original strand, 30626119 - 30626184
Alignment:
Q  88 attggaaattgaagtt-ttaatcttttttaaagaataatttattcattaaaaatgcttaaagagtgt 153  Q
    |||||||||||||||  ||||| |||||||| |||||||||||||||||| ||||||||||||||||    
T  30626119 attggaaattgaagtacttaattttttttaa-gaataatttattcattaagaatgcttaaagagtgt 30626184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 85 - 150
Target Start/End: Original strand, 32490759 - 32490824
Alignment:
Q  85 tgcattggaaattgaagttttaatcttttttaaagaataatttattcattaaaaatgcttaaagag 150  Q
    |||||||||||||||| | || |  ||||||| |||||||||||| | ||||||||||||||||||    
T  32490759 tgcattggaaattgaattatttaaattttttacagaataatttatcctttaaaaatgcttaaagag 32490824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 152
Target Start/End: Original strand, 5248677 - 5248744
Alignment:
Q  85 tgcattggaaattgaagttttaatcttttttaaagaataatttattcattaaaaatgcttaaagagtg 152  Q
    |||||||||||||| |||||| | | ||||||||||||||||| || ||||  ||| |||||||||||    
T  5248677 tgcattggaaattggagtttttaacatttttaaagaataatttctttattaggaatccttaaagagtg 5248744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 183
Target Start/End: Complemental strand, 17302954 - 17302855
Alignment:
Q  84 ttgcattggaaattgaagttttaatcttttttaaagaataatttattcattaaaaatgcttaaagagtgtctcaaatgcactcgttaacaagaccatttt 183  Q
    |||||||||||||||||||||   | ||||| ||| |||||||| || ||||  ||||||||||||||||  |    |||||||||||||||||| ||||    
T  17302954 ttgcattggaaattgaagtttacttttttttaaaataataatttctttattaggaatgcttaaagagtgtaccgggggcactcgttaacaagaccctttt 17302855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 152
Target Start/End: Original strand, 17883361 - 17883424
Alignment:
Q  89 ttggaaattgaagttttaatcttttttaaagaataatttattcattaaaaatgcttaaagagtg 152  Q
    ||||||||| |||||||   |||||||||| |||||||| || ||||||||| |||||||||||    
T  17883361 ttggaaattaaagtttttgacttttttaaaaaataatttctttattaaaaatccttaaagagtg 17883424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 182
Target Start/End: Complemental strand, 42265474 - 42265376
Alignment:
Q  84 ttgcattggaaattgaagttttaa-tcttttttaaagaataatttattcattaaaaatgcttaaagagtgtctcaaatgcactcgttaacaagaccattt 182  Q
    |||||||| ||||||||||||| | | |||||||||||||||||| ||||| |  |||||||||| ||||   |  | ||||||||||||||||||||||    
T  42265474 ttgcattgtaaattgaagtttttacttttttttaaagaataatttcttcataaggaatgcttaaa-agtgctccggaggcactcgttaacaagaccattt 42265376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 127
Target Start/End: Original strand, 26804063 - 26804105
Alignment:
Q  85 tgcattggaaattgaagttttaatcttttttaaagaataattt 127  Q
    |||||||||||||||||||||   |||||||||||||||||||    
T  26804063 tgcattggaaattgaagtttttgacttttttaaagaataattt 26804105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 39
Target Start/End: Complemental strand, 35393223 - 35393186
Alignment:
Q  2 aaaagtcaggggaatttttaacgaaagttacaatttca 39  Q
    |||| |||||||||||||| ||||||||||||||||||    
T  35393223 aaaattcaggggaatttttgacgaaagttacaatttca 35393186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 174
Target Start/End: Original strand, 37138689 - 37138754
Alignment:
Q  109 cttttttaaagaataatttattcattaaaaatgcttaaagagtgtctcaaatgcactcgttaacaa 174  Q
    |||||||||| |||||||| || ||| |||||  ||||| | ||||||| ||||||||||||||||    
T  37138689 cttttttaaaaaataatttcttaatttaaaatatttaaaaaatgtctcagatgcactcgttaacaa 37138754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 174
Target Start/End: Original strand, 47405274 - 47405363
Alignment:
Q  85 tgcattggaaattgaagttttaatcttttttaaagaataatttattcattaaaaatgcttaaagagtgtctcaaatgcactcgttaacaa 174  Q
    |||||| ||||||||||||||   | ||||||| |||||||||||| ||||  ||| ||||||||||| |   || ||||||||||||||    
T  47405274 tgcattagaaattgaagtttttgacctttttaatgaataatttatttattaggaatccttaaagagtgccctcaaggcactcgttaacaa 47405363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 152
Target Start/End: Original strand, 19914982 - 19915046
Alignment:
Q  88 attggaaattgaagttttaatcttttttaaagaataatttattcattaaaaatgcttaaagagtg 152  Q
    |||| |||||||| |||| |||||||||||| |||||||| ||||| |  | |||||||||||||    
T  19914982 attgaaaattgaaatttttatcttttttaaataataattttttcataaggagtgcttaaagagtg 19915046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 176
Target Start/End: Original strand, 34534829 - 34534920
Alignment:
Q  84 ttgcattggaaattgaagttttaatcttttttaaagaataatttattcattaaaaatgcttaaagagtgtctcaaatgcactcgttaacaaga 176  Q
    ||||||||||||||||||| || | | ||| |||||||| |||| || |||| ||||| |||||||||||| || |  ||| |||||||||||    
T  34534829 ttgcattggaaattgaagtcttta-catttctaaagaatgatttctttattataaatgtttaaagagtgtcccagagacacacgttaacaaga 34534920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 84 - 151
Target Start/End: Original strand, 8785326 - 8785393
Alignment:
Q  84 ttgcattggaaattgaagttttaatcttttttaaagaataatttattcattaaaaatgcttaaagagt 151  Q
    ||||||||||||||||| |||| |  ||||||||||||||||||||||||||  ||||||||||||||    
T  8785326 ttgcattggaaattgaaatttttactttttttaaagaataatttattcattaggaatgcttaaagagt 8785393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 88 - 152
Target Start/End: Complemental strand, 38167504 - 38167440
Alignment:
Q  88 attggaaattgaagttttaatcttttttaaagaataatttattcattaaaaatgcttaaagagtg 152  Q
    |||||||||||||||||| || |||||||||||||||||| ||||| |  |||||||||||||||    
T  38167504 attggaaattgaagtttttattttttttaaagaataatttcttcataagtaatgcttaaagagtg 38167440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 85 - 152
Target Start/End: Original strand, 34336517 - 34336584
Alignment:
Q  85 tgcattggaaattgaagttttaatcttttttaaagaataatttattcattaaaaatgcttaaagagtg 152  Q
    |||||||||||||||||||||   ||||||||||||||||||| || ||||| ||| |||||||||||    
T  34336517 tgcattggaaattgaagtttttgacttttttaaagaataatttctttattaagaatccttaaagagtg 34336584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 178
Target Start/End: Complemental strand, 11533268 - 11533201
Alignment:
Q  111 tttttaaagaataatttattcattaaaaatgcttaaagagtgtctcaaatgcactcgttaacaagacc 178  Q
    |||||||||||||||||||| ||| || ||| |||||||||||| | ||  |||||||||||||||||    
T  11533268 tttttaaagaataatttattaatttaacatgtttaaagagtgtcccgaaaacactcgttaacaagacc 11533201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 87 - 177
Target Start/End: Original strand, 37564378 - 37564468
Alignment:
Q  87 cattggaaattgaagttttaatcttttttaaagaataatttattcattaaaaatgcttaaagagtgtctcaaatgcactcgttaacaagac 177  Q
    |||||||||||||| | ||   ||||||||||||||||||| || ||| |  ||| |||||||||||| || | |||||||||||||||||    
T  37564378 cattggaaattgaactatttgacttttttaaagaataatttcttaatttagcatgtttaaagagtgtcccagaggcactcgttaacaagac 37564468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 85 - 154
Target Start/End: Complemental strand, 33650070 - 33650001
Alignment:
Q  85 tgcattggaaattgaagttttaatcttttttaaagaataatttattcattaaaaatgcttaaagagtgtc 154  Q
    |||||||||||||  |||||||  ||||||| ||||||||||| || |||| |||| |||||||||||||    
T  33650070 tgcattggaaattagagttttagactttttttaagaataatttctttattagaaattcttaaagagtgtc 33650001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 84 - 133
Target Start/End: Complemental strand, 44748622 - 44748573
Alignment:
Q  84 ttgcattggaaattgaagttttaatcttttttaaagaataatttattcat 133  Q
    ||||||||||||||||||| || || |||||||||||||||||| |||||    
T  44748622 ttgcattggaaattgaagtctttattttttttaaagaataatttcttcat 44748573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 152
Target Start/End: Original strand, 44254171 - 44254238
Alignment:
Q  85 tgcattggaaattgaagttttaatcttttttaaagaataatttattcattaaaaatgcttaaagagtg 152  Q
    |||||||||||||||||||||   ||||||||| ||| ||||| || |||| |||| |||||||||||    
T  44254171 tgcattggaaattgaagtttttgacttttttaaggaagaatttctttattagaaatccttaaagagtg 44254238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 156
Target Start/End: Original strand, 36782832 - 36782878
Alignment:
Q  110 ttttttaaagaataatttattcattaaaaatgcttaaagagtgtctc 156  Q
    ||||||||||||||||||||| ||||  |||| ||||||||||||||    
T  36782832 ttttttaaagaataatttatttattaggaatgtttaaagagtgtctc 36782878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 84 - 152
Target Start/End: Original strand, 28460035 - 28460103
Alignment:
Q  84 ttgcattggaaattgaagt-tttaatcttttttaaagaataatttattcattaaaaatgcttaaagagtg 152  Q
    ||||||||||||||||||| |||||| | ||||||| |||||||| || ||||  |||||||||||||||    
T  28460035 ttgcattggaaattgaagtctttaat-tattttaaaaaataatttttttattaggaatgcttaaagagtg 28460103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 88 - 176
Target Start/End: Original strand, 39644180 - 39644269
Alignment:
Q  88 attggaaattgaagt-tttaatcttttttaaagaataatttattcattaaaaatgcttaaagagtgtctcaaatgcactcgttaacaaga 176  Q
    ||||||||||| ||| |||| | ||||| |||||||||||| ||  |||| |||||||||||||||   ||||  |||||||||||||||    
T  39644180 attggaaattgtagtctttactttttttaaaagaataattttttagttaagaatgcttaaagagtgctccaaagacactcgttaacaaga 39644269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 174
Target Start/End: Original strand, 39691182 - 39691247
Alignment:
Q  109 cttttttaaagaataatttattcattaaaaatgcttaaagagtgtctcaaatgcactcgttaacaa 174  Q
    ||||||||||||||||||| || ||    ||||||||||||||||||| |  ||||||||||||||    
T  39691182 cttttttaaagaataattttttaatgtggaatgcttaaagagtgtctcgagggcactcgttaacaa 39691247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 178
Target Start/End: Original strand, 10335092 - 10335160
Alignment:
Q  110 ttttttaaagaataatttattcattaaaaatgcttaaagagtgtctcaaatgcactcgttaacaagacc 178  Q
    ||||||| |||||||||||||| ||   ||| |||||||||||   | |||||||||||||||||||||    
T  10335092 ttttttatagaataatttattcttttggaattcttaaagagtgctccgaatgcactcgttaacaagacc 10335160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 84 - 152
Target Start/End: Complemental strand, 3050 - 2983
Alignment:
Q  84 ttgcattggaaattgaagttttaatcttttttaaagaataatttattcattaaaaatgcttaaagagtg 152  Q
    ||||| ||||||||||||||||| | |||||||||||||||||| || |||| ||||||||||||||||    
T  3050 ttgcagtggaaattgaagttttact-ttttttaaagaataatttctttattagaaatgcttaaagagtg 2983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0717 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0717
Description:

Target: scaffold0717; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 88 - 185
Target Start/End: Original strand, 5008 - 5105
Alignment:
Q  88 attggaaattgaagttttaatcttttttaaagaataatttattcattaaaaatgcttaaagagtgtctcaaatgcactcgttaacaagaccattttat 185  Q
    ||||||||||||||| || |  |||||||||||||||||| |||||||  ||||||||||||||  | || | ||| || ||||||||||| ||||||    
T  5008 attggaaattgaagtctttactttttttaaagaataatttcttcattaggaatgcttaaagagttccccagaagcattcattaacaagacccttttat 5105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 110 - 155
Target Start/End: Complemental strand, 67717 - 67672
Alignment:
Q  110 ttttttaaagaataatttattcattaaaaatgcttaaagagtgtct 155  Q
    |||||||||||||||||| ||||||| |||||||||||||||||||    
T  67717 ttttttaaagaataatttcttcattagaaatgcttaaagagtgtct 67672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 88 - 133
Target Start/End: Complemental strand, 34556205 - 34556160
Alignment:
Q  88 attggaaattgaagttttaatcttttttaaagaataatttattcat 133  Q
    |||||||||||||||||| || ||||||||||||||||||||||||    
T  34556205 attggaaattgaagtttttattttttttaaagaataatttattcat 34556160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 178
Target Start/End: Original strand, 34185069 - 34185163
Alignment:
Q  84 ttgcattggaaattgaagt-tttaatcttttttaaagaataatttattcattaaaaatgcttaaagagtgtctcaaatgcactcgttaacaagacc 178  Q
    ||||||||||||||||||| ||||||| |||| |||||||||||| || ||||  ||||||||||||||| | |  | ||||| ||||||||||||    
T  34185069 ttgcattggaaattgaagtctttaatcatttt-aaagaataatttctttattaggaatgcttaaagagtgccccggaggcacttgttaacaagacc 34185163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 85 - 178
Target Start/End: Complemental strand, 29408065 - 29407972
Alignment:
Q  85 tgcattggaaattgaagttttaatcttttttaaagaataatttattcattaaaaatgcttaaagagtgtctcaaatgcactcgttaacaagacc 178  Q
    |||||| ||||||| ||||||   ||||||||||||||||||| || ||||  ||| ||||||||||| |   || ||||||||||||||||||    
T  29408065 tgcattagaaattggagtttttgacttttttaaagaataatttctttattaggaatccttaaagagtgcccttaaggcactcgttaacaagacc 29407972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 154
Target Start/End: Complemental strand, 17124681 - 17124638
Alignment:
Q  111 tttttaaagaataatttattcattaaaaatgcttaaagagtgtc 154  Q
    ||||||||||||||||| |||||||||||| ||||| |||||||    
T  17124681 tttttaaagaataattttttcattaaaaatccttaatgagtgtc 17124638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 88 - 153
Target Start/End: Original strand, 11465672 - 11465737
Alignment:
Q  88 attggaaattgaagttttaatcttttttaaagaataatttattcattaaaaatgcttaaagagtgt 153  Q
    |||| |||||||||||||   ||||||||||||||||||| || ||||||||| ||||||||||||    
T  11465672 attgaaaattgaagtttttgacttttttaaagaataatttttttattaaaaatccttaaagagtgt 11465737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 152
Target Start/End: Complemental strand, 32734743 - 32734676
Alignment:
Q  85 tgcattggaaattgaagttttaatcttttttaaagaataatttattcattaaaaatgcttaaagagtg 152  Q
    |||||||||||||  |||||| | ||||||||||||||||||| || ||||  ||| |||||||||||    
T  32734743 tgcattggaaattagagtttttaccttttttaaagaataatttctttattaggaatccttaaagagtg 32734676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 178
Target Start/End: Original strand, 53433254 - 53433324
Alignment:
Q  109 cttttttaaagaataatttattcattaaaaatgcttaaagagtgt-ctcaaatgcactcgttaacaagacc 178  Q
    |||||||| |||||||||| ||| || |||||||| ||||| ||| ||||||  |||||||||||||||||    
T  53433254 cttttttatagaataatttcttcttttaaaatgctaaaagaatgttctcaaagacactcgttaacaagacc 53433324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 154
Target Start/End: Original strand, 53766736 - 53766805
Alignment:
Q  84 ttgcattggaaattgaagttttaatcttttttaaagaataatttattcattaaaaatgcttaaagagtgtc 154  Q
    |||||||| ||||||||| ||| | |||||||||| |||||||| |||||||  ||| |||||||||||||    
T  53766736 ttgcattgaaaattgaagctttta-cttttttaaaaaataattttttcattaggaatacttaaagagtgtc 53766805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 152
Target Start/End: Original strand, 4275254 - 4275318
Alignment:
Q  88 attggaaattgaagttttaatcttttttaaagaataatttattcattaaaaatgcttaaagagtg 152  Q
    ||||||| ||| |||||| | ||||||||||||||||||| || ||||| |||  ||||||||||    
T  4275254 attggaagttggagtttttaacttttttaaagaataatttttttattaagaatctttaaagagtg 4275318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 152
Target Start/End: Original strand, 25299080 - 25299148
Alignment:
Q  84 ttgcattggaaattgaagttttaatcttttttaaagaataatttattcattaaaaatgcttaaagagtg 152  Q
    |||||||| |||||||| | || |  |||||||||||||||||| || |||| ||||||||||| ||||    
T  25299080 ttgcattgaaaattgaaatctttactttttttaaagaataatttctttattagaaatgcttaaaaagtg 25299148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 149
Target Start/End: Original strand, 47915007 - 47915062
Alignment:
Q  93 aaattgaagttttaatcttttttaaagaataatttattcattaaaaatgcttaaaga 149  Q
    ||||||||||||| | ||||||||||||||||||| || ||||  ||||||||||||    
T  47915007 aaattgaagttttta-cttttttaaagaataatttctttattatgaatgcttaaaga 47915062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 156
Target Start/End: Complemental strand, 50941742 - 50941670
Alignment:
Q  84 ttgcattggaaattgaagttttaatcttttttaaagaataatttattcattaaaaatgcttaaagagtgtctc 156  Q
    |||||||||||||||||||||| |  ||||| |||||| ||||  |  || | ||||||||||||||||||||    
T  50941742 ttgcattggaaattgaagtttttacttttttaaaagaacaattactctataagaaatgcttaaagagtgtctc 50941670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 87 - 151
Target Start/End: Complemental strand, 17600 - 17536
Alignment:
Q  87 cattggaaattgaagttttaatcttttttaaagaataatttattcattaaaaatgcttaaagagt 151  Q
    ||||| ||||| ||||||| |  || |||||||||||||||||| ||||||||||||||||||||    
T  17600 cattgaaaattaaagtttttaatttatttaaagaataatttatttattaaaaatgcttaaagagt 17536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 84 - 183
Target Start/End: Complemental strand, 51291149 - 51291050
Alignment:
Q  84 ttgcattggaaattgaagt-tttaatcttttttaaagaataatttattcattaaaaatgcttaaagagtgtctcaaatgcactcgttaacaagaccattt 182  Q
    ||||||||||||||||||| |||||| | ||||||||||||| || |||||||  |||| |||||||||| ||| |  ||| |||||||||||||| |||    
T  51291149 ttgcattggaaattgaagtctttaat-tattttaaagaataacttcttcattaggaatgtttaaagagtgcctcgagggcattcgttaacaagacccttt 51291051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 93 - 178
Target Start/End: Complemental strand, 46521558 - 46521473
Alignment:
Q  93 aaattgaagttttaatcttttttaaagaataatttattcattaaaaatgcttaaagagtg-tctcaaatgcactcgttaacaagacc 178  Q
    |||||| |||||| | |||||||||||||||||||||| ||||  ||| ||||||||||| ||| ||  ||||||||||||||||||    
T  46521558 aaattggagtttttaacttttttaaagaataatttatttattaggaatccttaaagagtgctct-aagggcactcgttaacaagacc 46521473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 177
Target Start/End: Original strand, 8607651 - 8607743
Alignment:
Q  85 tgcattggaaattgaagttttaatcttttttaaagaataatttattcattaaaaatgcttaaagagtgtctcaaatgcactcgttaacaagac 177  Q
    ||||||||| |||||||| || |  |||||||||||||||||| || ||||| |||| ||||||||||   |  | |||||||||||||||||    
T  8607651 tgcattggatattgaagtatttactttttttaaagaataatttctttattaagaatgtttaaagagtgatacggaggcactcgttaacaagac 8607743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 151
Target Start/End: Original strand, 33266866 - 33266930
Alignment:
Q  87 cattggaaattgaagttttaatcttttttaaagaataatttattcattaaaaatgcttaaagagt 151  Q
    ||||||||||| |||||||   ||||||||||||||||||| || |||||||||  |||||||||    
T  33266866 cattggaaattaaagtttttgacttttttaaagaataatttctttattaaaaatctttaaagagt 33266930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 174
Target Start/End: Complemental strand, 49236716 - 49236653
Alignment:
Q  110 ttttttaaagaataatttattcattaaaaatgcttaaagagtgtctcaaatgcactcgttaacaa 174  Q
    ||||||||||||||||||||||||||||||| | |||||||||  || ||  |||||||||||||    
T  49236716 ttttttaaagaataatttattcattaaaaat-cctaaagagtgcatcgaagccactcgttaacaa 49236653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 154
Target Start/End: Complemental strand, 49979774 - 49979709
Alignment:
Q  88 attggaaattgaagt-tttaatcttttttaaagaataatttattcattaaaaatgcttaaagagtgtc 154  Q
    ||||||||||||||| |||||   ||||||||||||||||| |||||||  |||||||||||||||||    
T  49979774 attggaaattgaagtctttaaa--tttttaaagaataattttttcattatgaatgcttaaagagtgtc 49979709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 152
Target Start/End: Original strand, 20180267 - 20180334
Alignment:
Q  85 tgcattggaaattgaagttttaatcttttttaaagaataatttattcattaaaaatgcttaaagagtg 152  Q
    ||||||| |||||| ||||||   |||||||||| ||||||||||| ||||| ||| |||||||||||    
T  20180267 tgcattgaaaattggagtttttgacttttttaaataataatttatttattaagaattcttaaagagtg 20180334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 181
Target Start/End: Original strand, 24546777 - 24546847
Alignment:
Q  110 ttttttaaagaataatttattcattaaaaatgcttaaagagtgtctcaaatgcactcgttaacaagaccatt 181  Q
    ||||||||||||||||||  | ||| || ||||||||||||||| || |  |||||||||||||||||||||    
T  24546777 ttttttaaagaataatttcctaatttaacatgcttaaagagtgt-tctagagcactcgttaacaagaccatt 24546847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 178
Target Start/End: Complemental strand, 28695826 - 28695735
Alignment:
Q  87 cattggaaattgaagttttaatcttttttaaagaataatttattcattaaaaatgcttaaagagtgtctcaaatgcactcgttaacaagacc 178  Q
    |||||||||||||||||||   |||||||||| |||||||| || ||||  ||| ||||||||||| |   |  ||||||||||||||||||    
T  28695826 cattggaaattgaagtttttgacttttttaaaaaataatttctttattagtaatccttaaagagtgcccttagggcactcgttaacaagacc 28695735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 152
Target Start/End: Complemental strand, 53919930 - 53919863
Alignment:
Q  85 tgcattggaaattgaagttttaatcttttttaaagaataatttattcattaaaaatgcttaaagagtg 152  Q
    ||||| |||||||||| ||||   |||||||| |||||||||||||| ||  ||||||||||||||||    
T  53919930 tgcatcggaaattgaaatttttgacttttttatagaataatttattcttttgaaatgcttaaagagtg 53919863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 151
Target Start/End: Complemental strand, 2818421 - 2818355
Alignment:
Q  85 tgcattggaaattgaagttttaatcttttttaaagaataatttattcattaaaaatgcttaaagagt 151  Q
    |||||||||||||||| ||||   | |||| |||||||||||| || ||| ||||||||||||||||    
T  2818421 tgcattggaaattgaactttttgaccttttaaaagaataatttcttaatttaaaatgcttaaagagt 2818355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 152
Target Start/End: Complemental strand, 29899527 - 29899485
Alignment:
Q  110 ttttttaaagaataatttattcattaaaaatgcttaaagagtg 152  Q
    ||||||||||||||||||||||||||  |||||||||| ||||    
T  29899527 ttttttaaagaataatttattcattatgaatgcttaaaaagtg 29899485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 84 - 153
Target Start/End: Original strand, 25138970 - 25139039
Alignment:
Q  84 ttgcattggaaattgaagttttaatcttttttaaagaataatttattcattaaaaatgcttaaagagtgt 153  Q
    |||||||| ||||| ||||||| | | ||||||||| ||||||| ||| |||||| || |||||||||||    
T  25138970 ttgcattgtaaattaaagtttttaacctttttaaagtataatttcttctttaaaattgtttaaagagtgt 25139039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 154
Target Start/End: Original strand, 46088560 - 46088629
Alignment:
Q  85 tgcattggaaattgaagttttaatcttttttaaagaataatttattcattaaaaatgcttaaagagtgtc 154  Q
    |||||||||||||||||||||    |||||||| ||||||||| || ||||  ||| |||||||||||||    
T  46088560 tgcattggaaattgaagtttttgatttttttaaggaataatttctttattaggaattcttaaagagtgtc 46088629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 84 - 149
Target Start/End: Original strand, 45624306 - 45624373
Alignment:
Q  84 ttgcattggaaattgaagttttaat--cttttttaaagaataatttattcattaaaaatgcttaaaga 149  Q
    |||||||| ||||||||||||||||  ||||||||||||||||||| ||||||||  || ||||||||    
T  45624306 ttgcattgaaaattgaagttttaatttcttttttaaagaataattttttcattaaggatacttaaaga 45624373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 152
Target Start/End: Original strand, 27501779 - 27501846
Alignment:
Q  85 tgcattggaaattgaagttttaatcttttttaaagaataatttattcattaaaaatgcttaaagagtg 152  Q
    |||||||||||||||||||||   |||||| ||| |||||||| || ||||||||| |||||||||||    
T  27501779 tgcattggaaattgaagtttttgactttttaaaaaaataatttctttattaaaaattcttaaagagtg 27501846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 178
Target Start/End: Original strand, 37082247 - 37082337
Alignment:
Q  87 cattggaaattgaagttttaatcttttttaaagaataatttattcattaaaaatgcttaaagagtgtctcaaatgcactcgttaacaagacc 178  Q
    ||||| ||||||||||||| | ||||||||||||||||||| ||||| |  |||||||||| |||| | | ||  |||||||||||||||||    
T  37082247 cattgaaaattgaagttttta-cttttttaaagaataatttcttcataaggaatgcttaaaaagtgacccgaagacactcgttaacaagacc 37082337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 178
Target Start/End: Original strand, 5962007 - 5962102
Alignment:
Q  85 tgcattggaaattgaagt-tttaatcttttttaaagaataattta-ttcattaaaaatgcttaaagagtgtctcaaatgcactcgttaacaagacc 178  Q
    |||||||||||||||| | |||||| |||||||  ||||| |||  ||| || | |||||||||||||||||||  | ||||||||||||||||||    
T  5962007 tgcattggaaattgaaatatttaattttttttatggaatatttttcttcttttagaatgcttaaagagtgtctcggaggcactcgttaacaagacc 5962102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 177
Target Start/End: Original strand, 33634899 - 33634934
Alignment:
Q  142 cttaaagagtgtctcaaatgcactcgttaacaagac 177  Q
    ||||||||||||||||| ||||||||||||||||||    
T  33634899 cttaaagagtgtctcaagtgcactcgttaacaagac 33634934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 152
Target Start/End: Complemental strand, 44195569 - 44195502
Alignment:
Q  85 tgcattggaaattgaagttttaatcttttttaaagaataatttattcattaaaaatgcttaaagagtg 152  Q
    ||||||| |||||||| | || | ||||| ||||||||||||| || ||| |||||||||||||||||    
T  44195569 tgcattgtaaattgaattatttaacttttgtaaagaataatttcttaatttaaaatgcttaaagagtg 44195502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 149
Target Start/End: Complemental strand, 26809063 - 26808997
Alignment:
Q  84 ttgcattggaaattgaagttttaa-tcttttttaaagaataatttattcattaaaaatgcttaaaga 149  Q
    ||||||||||||||||| |||| | | |||||||| ||||||||| ||||| || ||||||||||||    
T  26809063 ttgcattggaaattgaaatttttacttttttttaatgaataatttcttcataaagaatgcttaaaga 26808997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 127
Target Start/End: Original strand, 33962987 - 33963029
Alignment:
Q  85 tgcattggaaattgaagttttaatcttttttaaagaataattt 127  Q
    ||||||| |||||||||| |||| |||||||||||||||||||    
T  33962987 tgcattgaaaattgaagtgttaaacttttttaaagaataattt 33963029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 88 - 157
Target Start/End: Original strand, 14663227 - 14663296
Alignment:
Q  88 attggaaattgaagttttaatcttttttaaagaataatttattcattaaaaatgcttaaagagtgtctca 157  Q
    ||||||||||||| | ||   ||| ||||||||||||||| || ||| |||||||||||| |||||||||    
T  14663227 attggaaattgaactatttgacttatttaaagaataattttttaatttaaaatgcttaaaaagtgtctca 14663296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 111 - 172
Target Start/End: Original strand, 18671878 - 18671938
Alignment:
Q  111 tttttaaagaataatttattcattaaaaatgcttaaagagtgtctcaaatgcactcgttaac 172  Q
    |||||| |||||||||||||| ||| ||||| ||||||||||||| | | ||||||||||||    
T  18671878 tttttatagaataatttattctttagaaatgtttaaagagtgtctgaga-gcactcgttaac 18671938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 177
Target Start/End: Original strand, 6761770 - 6761862
Alignment:
Q  85 tgcattggaaattgaagttttaatcttttttaaagaataatttattcattaaaaatgcttaaagagtgtctcaaatgcactcgttaacaagac 177  Q
    |||||||||||||||| | ||   |||||||| ||||| |||||||| ||   ||||||||||||||| |||  | ||||| |||||||||||    
T  6761770 tgcattggaaattgaaatatttgacttttttatagaatgatttattcttttggaatgcttaaagagtgcctcggaagcacttgttaacaagac 6761862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 148
Target Start/End: Complemental strand, 88296 - 88236
Alignment:
Q  88 attggaaattgaagttttaatcttttttaaagaataatttattcattaaaaatgcttaaag 148  Q
    |||||||||| ||||||| || |||||| ||||||||||| |||||||  |||||||||||    
T  88296 attggaaattaaagtttttatttttttttaagaataatttcttcattaggaatgcttaaag 88236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University