View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4712_low_8 (Length: 241)

Name: NF4712_low_8
Description: NF4712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4712_low_8
NF4712_low_8
[»] chr1 (7 HSPs)
chr1 (48-241)||(27585716-27585906)
chr1 (86-241)||(36475730-36475884)
chr1 (190-241)||(47445206-47445257)
chr1 (182-241)||(27585523-27585582)
chr1 (199-241)||(36475505-36475547)
chr1 (199-241)||(47445643-47445685)
chr1 (164-235)||(787688-787762)
[»] chr5 (12 HSPs)
chr5 (86-241)||(7491472-7491622)
chr5 (63-235)||(29500451-29500620)
chr5 (155-237)||(14278520-14278602)
chr5 (192-241)||(5348365-5348414)
chr5 (190-241)||(36429929-36429980)
chr5 (198-241)||(31808503-31808546)
chr5 (182-230)||(7493115-7493164)
chr5 (202-235)||(29500239-29500272)
chr5 (203-235)||(36429513-36429545)
chr5 (199-241)||(933824-933866)
chr5 (160-216)||(14278147-14278200)
chr5 (206-235)||(36681722-36681751)
[»] chr4 (8 HSPs)
chr4 (63-241)||(21226272-21226444)
chr4 (121-241)||(21224933-21225053)
chr4 (190-240)||(27455570-27455620)
chr4 (182-235)||(21224481-21224534)
chr4 (190-241)||(49681482-49681533)
chr4 (188-235)||(21226032-21226079)
chr4 (201-241)||(27455143-27455183)
chr4 (199-235)||(49681901-49681937)
[»] chr3 (9 HSPs)
chr3 (124-241)||(35942582-35942702)
chr3 (190-241)||(50837682-50837733)
chr3 (192-241)||(54560675-54560724)
chr3 (182-241)||(35942327-35942386)
chr3 (190-241)||(47471343-47471391)
chr3 (201-241)||(47470919-47470959)
chr3 (182-241)||(28539226-28539282)
chr3 (199-233)||(50838125-50838159)
chr3 (63-119)||(16110981-16111040)
[»] chr7 (10 HSPs)
chr7 (124-234)||(3986751-3986864)
chr7 (190-241)||(36067965-36068016)
chr7 (182-235)||(32390658-32390712)
chr7 (199-235)||(3987107-3987143)
chr7 (155-235)||(23256494-23256579)
chr7 (203-235)||(30480579-30480611)
chr7 (169-235)||(41590251-41590314)
chr7 (151-184)||(32390290-32390323)
chr7 (202-235)||(36067525-36067558)
chr7 (169-235)||(41590693-41590756)
[»] chr2 (8 HSPs)
chr2 (125-238)||(33003111-33003226)
chr2 (190-241)||(10256347-10256398)
chr2 (192-241)||(4593261-4593310)
chr2 (155-235)||(45114607-45114691)
chr2 (151-211)||(33003537-33003600)
chr2 (156-207)||(15765487-15765541)
chr2 (201-241)||(10255894-10255934)
chr2 (199-241)||(33003597-33003639)
[»] scaffold0102 (2 HSPs)
scaffold0102 (190-241)||(33002-33053)
scaffold0102 (201-241)||(32577-32617)
[»] chr8 (4 HSPs)
chr8 (190-241)||(14791317-14791368)
chr8 (201-241)||(20112145-20112185)
chr8 (202-241)||(20111716-20111755)
chr8 (155-213)||(21190351-21190413)
[»] chr6 (7 HSPs)
chr6 (190-241)||(17732240-17732291)
chr6 (190-241)||(30710143-30710194)
chr6 (190-241)||(6008862-6008910)
chr6 (199-241)||(17732684-17732726)
chr6 (199-235)||(6009296-6009332)
chr6 (179-235)||(18749025-18749081)
chr6 (201-241)||(30709714-30709754)
[»] scaffold0169 (1 HSPs)
scaffold0169 (156-235)||(26997-27080)


Alignment Details
Target: chr1 (Bit Score: 140; Significance: 2e-73; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 48 - 241
Target Start/End: Original strand, 27585716 - 27585906
Alignment:
Q  48 tttaaagaactaattagtgaacatatcctttgcattca--ttaatacctttgagaaaacaagctttctatgagaactatgagaaaacaactttagattta 145  Q
    ||||||||||||||||||||| || ||| |||||||||  ||||||  |||||||||    |||||||||||||||||||||||||||||||||||||||    
T  27585716 tttaaagaactaattagtgaaaatgtcccttgcattcaatttaatat-tttgagaaa----gctttctatgagaactatgagaaaacaactttagattta 27585810  T
Q  146 tagctttaacttaggtggtgttattgttgttgatggtggaggtatagtaatgagatgatgatgatgttgttaatggttgttgtttcttaatttttt 241  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27585811 tagctttaacttaggtggtgttattgttgttgatggtggaggtgtagtaatgagatgatgatgatgttgttaatggttgttgtttcttaatttttt 27585906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 86 - 241
Target Start/End: Original strand, 36475730 - 36475884
Alignment:
Q  86 ttaatacctttgagaaaacaagctttctatgagaactatgagaaaacaactttagatttatagctttaacttaggtggtgttattgttgttgatggtgga 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||    
T  36475730 ttaatacctttgagaaaacaagctttctatgagaactatgagaaaacaactttagatttatagttgtaacttaggtggtg-tattgttgttgatggtgga 36475828  T
Q  186 ggtatagtaatgagatgatgatgatgttgttaatggttgttgtttcttaatttttt 241  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36475829 ggtgtagtaatgagatgatgatgatgttgttaatggttgttgtttcttaatttttt 36475884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 190 - 241
Target Start/End: Complemental strand, 47445257 - 47445206
Alignment:
Q  190 tagtaatgagatgatgatgatgttgttaatggttgttgtttcttaatttttt 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47445257 tagtaatgagatgatgatgatgttgttaatggttgttgtttcttaatttttt 47445206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 182 - 241
Target Start/End: Complemental strand, 27585582 - 27585523
Alignment:
Q  182 tggaggtatagtaatgagatgatgatgatgttgttaatggttgttgtttcttaatttttt 241  Q
    |||| ||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||    
T  27585582 tggatgtatagtaatgggatgatgatgatgttgttaatggttattgtttcttaaattttt 27585523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 199 - 241
Target Start/End: Complemental strand, 36475547 - 36475505
Alignment:
Q  199 gatgatgatgatgttgttaatggttgttgtttcttaatttttt 241  Q
    ||||||||||||||||||||||||||||||||||||| |||||    
T  36475547 gatgatgatgatgttgttaatggttgttgtttcttaaattttt 36475505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 199 - 241
Target Start/End: Original strand, 47445643 - 47445685
Alignment:
Q  199 gatgatgatgatgttgttaatggttgttgtttcttaatttttt 241  Q
    |||||||||| |||||||||||||||||||||||||| |||||    
T  47445643 gatgatgatgttgttgttaatggttgttgtttcttaaattttt 47445685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 235
Target Start/End: Original strand, 787688 - 787762
Alignment:
Q  164 tgttattgttgttgatggtg---gaggtatagtaatgagatgatgatgatgttgttaatggttgttgtttcttaa 235  Q
    ||||||||||||||| ||||   ||||| |||||||||||||||| || || |||| ||| ||||||||||||||    
T  787688 tgttattgttgttgaaggtgttggaggtttagtaatgagatgatggtggtggtgttgatgattgttgtttcttaa 787762  T

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Target: chr5 (Bit Score: 90; Significance: 1e-43; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 86 - 241
Target Start/End: Complemental strand, 7491622 - 7491472
Alignment:
Q  86 ttaatacctttgagaaaacaagctttctatgagaactatgagaaaacaactttagatttatagcttt-aacttaggtggtgttattgttgttgatggtgg 184  Q
    |||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  7491622 ttaatacctttgagaaaacaagctttctatgagaa---------aacaactttagatttatagcttttaacttaggtggtgttattgctgttgatggtgg 7491532  T
Q  185 ---aggtatagtaatgagatgatgatgatgttgttaatggttgttgtttcttaatttttt 241  Q
       |||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  7491531 tggaggtgtagtaataagatgatgatgatgttgttaatggttattgtttcttaatttttt 7491472  T

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Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 63 - 235
Target Start/End: Original strand, 29500451 - 29500620
Alignment:
Q  63 agtgaacatatcctttgcattca---ttaatacctttgagaaaacaagctttctatgagaactatgagaaaacaactttagatttatagctttaacttag 159  Q
    ||||||||| ||| |||||||||   ||||||| ||||||||||||||||||||||         ||||||||||||||||||||||| ||||||||| |    
T  29500451 agtgaacatgtcccttgcattcaactttaatacttttgagaaaacaagctttctat---------gagaaaacaactttagatttataactttaacttgg 29500541  T
Q  160 gtggtgttattgttgttga---tggtggaggtatagtaatgagatgatgatgatgttgttaatggttgttgtttcttaa 235  Q
    | |||||||||||||||||   ||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||    
T  29500542 gaggtgttattgttgttgatggtggtggatgtgtagtaatgagatgatgatgatgttgttaatggttgttatttcttaa 29500620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 155 - 237
Target Start/End: Original strand, 14278520 - 14278602
Alignment:
Q  155 cttaggtggtgttattgttgttgatggtggaggtatagtaatgagatgatgatgatgttgttaatggttgttgtttcttaatt 237  Q
    |||||| ||||||||||||| |||||||||| || ||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  14278520 cttaggcggtgttattgttgatgatggtggaagtgtagtaatgagatgatgatgatgttgttgatgattgttgtttcttaatt 14278602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 192 - 241
Target Start/End: Original strand, 5348365 - 5348414
Alignment:
Q  192 gtaatgagatgatgatgatgttgttaatggttgttgtttcttaatttttt 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5348365 gtaatgagatgatgatgatgttgttaatggttgttgtttcttaatttttt 5348414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 190 - 241
Target Start/End: Original strand, 36429929 - 36429980
Alignment:
Q  190 tagtaatgagatgatgatgatgttgttaatggttgttgtttcttaatttttt 241  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  36429929 tagtaatgagatgatgatgatgttgttaatggttgctgtttcttaatttttt 36429980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 198 - 241
Target Start/End: Complemental strand, 31808546 - 31808503
Alignment:
Q  198 agatgatgatgatgttgttaatggttgttgtttcttaatttttt 241  Q
    ||||||||||||||||||||||||||||||| ||||||||||||    
T  31808546 agatgatgatgatgttgttaatggttgttgtatcttaatttttt 31808503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 230
Target Start/End: Original strand, 7493115 - 7493164
Alignment:
Q  182 tggaggtatagtaatgagatgatg-atgatgttgttaatggttgttgttt 230  Q
    |||| |||||| |||||||||||| |||||||||||||||||||||||||    
T  7493115 tggatgtatagcaatgagatgatggatgatgttgttaatggttgttgttt 7493164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 202 - 235
Target Start/End: Complemental strand, 29500272 - 29500239
Alignment:
Q  202 gatgatgatgttgttaatggttgttgtttcttaa 235  Q
    ||||||||||||||||||||||||||||||||||    
T  29500272 gatgatgatgttgttaatggttgttgtttcttaa 29500239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 203 - 235
Target Start/End: Complemental strand, 36429545 - 36429513
Alignment:
Q  203 atgatgatgttgttaatggttgttgtttcttaa 235  Q
    |||||||||||||||||||||||||||||||||    
T  36429545 atgatgatgttgttaatggttgttgtttcttaa 36429513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 241
Target Start/End: Complemental strand, 933866 - 933824
Alignment:
Q  199 gatgatgatgatgttgttaatggttgttgtttcttaatttttt 241  Q
    |||||||||||||||||||||| ||||||||| | ||||||||    
T  933866 gatgatgatgatgttgttaatgattgttgtttttgaatttttt 933824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 216
Target Start/End: Complemental strand, 14278200 - 14278147
Alignment:
Q  160 gtggtgttattgttgttgatggtggaggtatagtaatgagatgatgatgatgttgtt 216  Q
    ||||||||||||||||||||||   |||| ||||||||| |||||||||||| ||||    
T  14278200 gtggtgttattgttgttgatgg---aggtgtagtaatgacatgatgatgatgatgtt 14278147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 206 - 235
Target Start/End: Original strand, 36681722 - 36681751
Alignment:
Q  206 atgatgttgttaatggttgttgtttcttaa 235  Q
    ||||||||||||||||||||||||||||||    
T  36681722 atgatgttgttaatggttgttgtttcttaa 36681751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 8e-42; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 63 - 241
Target Start/End: Original strand, 21226272 - 21226444
Alignment:
Q  63 agtgaacatatcctttgcattca---ttaatacctttgagaaaacaagctttctatgagaactatgagaaaacaactttagatttatagctttaacttag 159  Q
    ||||||||| ||| |||||||||   ||||||||||||||||||||||||| |||| ||||         |||||||||| |||||||||||||||||||    
T  21226272 agtgaacatgtcccttgcattcagctttaatacctttgagaaaacaagcttcctattagaa---------aacaactttaaatttatagctttaacttag 21226362  T
Q  160 gtggtgttattgttgttga---tggtggaggtatagtaatgagatgatgatgatgttgttaatggttgttgtttcttaatttttt 241  Q
    |||||||||||||||||||   |||||||||| |||||||||   ||||||||||||||||||||||||||||||||||||||||    
T  21226363 gtggtgttattgttgttgatggtggtggaggtgtagtaatga---gatgatgatgttgttaatggttgttgtttcttaatttttt 21226444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 121 - 241
Target Start/End: Original strand, 21224933 - 21225053
Alignment:
Q  121 ctatgagaaaacaactttagatttatagctttaacttaggtggtgttattgttgttgatggtggaggtatagtaatgagatgatgatgatgttgttaatg 220  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||    ||||| |   |||||||||||||||||||    
T  21224933 ctatgagaaaacatctttagatttatagctttaacttaggtggtgttattgttattgatggtggtggaggtgtaataacgagatgatgatgttgttaatg 21225032  T
Q  221 gttgttgtttcttaatttttt 241  Q
    |||||||||||||||||||||    
T  21225033 gttgttgtttcttaatttttt 21225053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 190 - 240
Target Start/End: Original strand, 27455570 - 27455620
Alignment:
Q  190 tagtaatgagatgatgatgatgttgttaatggttgttgtttcttaattttt 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27455570 tagtaatgagatgatgatgatgttgttaatggttgttgtttcttaattttt 27455620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 182 - 235
Target Start/End: Complemental strand, 21224534 - 21224481
Alignment:
Q  182 tggaggtatagtaatgagatgatgatgatgttgttaatggttgttgtttcttaa 235  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  21224534 tggatgtatagtaatgagatgatgatgatgttgttaatggttgttgtttcttaa 21224481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 190 - 241
Target Start/End: Complemental strand, 49681533 - 49681482
Alignment:
Q  190 tagtaatgagatgatgatgatgttgttaatggttgttgtttcttaatttttt 241  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  49681533 tagtaatgagatgataatgatgttgttaatggttgttgtttcttaatttttt 49681482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 188 - 235
Target Start/End: Complemental strand, 21226079 - 21226032
Alignment:
Q  188 tatagtaatgagatgatgatgatgttgttaatggttgttgtttcttaa 235  Q
    |||||||||||| ||||||||||||| |||||||||||||||||||||    
T  21226079 tatagtaatgagttgatgatgatgtttttaatggttgttgtttcttaa 21226032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 201 - 241
Target Start/End: Complemental strand, 27455183 - 27455143
Alignment:
Q  201 tgatgatgatgttgttaatggttgttgtttcttaatttttt 241  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  27455183 tgatgatgatgttgttaatggttgttgtttcttaaattttt 27455143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 235
Target Start/End: Original strand, 49681901 - 49681937
Alignment:
Q  199 gatgatgatgatgttgttaatggttgttgtttcttaa 235  Q
    |||||||||| ||||||||||||||||||||||||||    
T  49681901 gatgatgatgttgttgttaatggttgttgtttcttaa 49681937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 124 - 241
Target Start/End: Original strand, 35942582 - 35942702
Alignment:
Q  124 tgagaaaacaactttagatttatagctttaacttaggtggtgttattgttgttgatggtgg---aggtatagtaatgagatgatgatgatgttgttaatg 220  Q
    |||||||||||||||| | || ||||||||||||||||| |||||||||||||||||||||   |||| |||||||||||||||| ||||||||||||||    
T  35942582 tgagaaaacaactttaaaattttagctttaacttaggtgatgttattgttgttgatggtggtggaggtgtagtaatgagatgatggtgatgttgttaatg 35942681  T
Q  221 gttgttgtttcttaatttttt 241  Q
    |||||||||||||||||||||    
T  35942682 gttgttgtttcttaatttttt 35942702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 190 - 241
Target Start/End: Complemental strand, 50837733 - 50837682
Alignment:
Q  190 tagtaatgagatgatgatgatgttgttaatggttgttgtttcttaatttttt 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50837733 tagtaatgagatgatgatgatgttgttaatggttgttgtttcttaatttttt 50837682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 192 - 241
Target Start/End: Original strand, 54560675 - 54560724
Alignment:
Q  192 gtaatgagatgatgatgatgttgttaatggttgttgtttcttaatttttt 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54560675 gtaatgagatgatgatgatgttgttaatggttgttgtttcttaatttttt 54560724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 182 - 241
Target Start/End: Complemental strand, 35942386 - 35942327
Alignment:
Q  182 tggaggtatagtaatgagatgatgatgatgttgttaatggttgttgtttcttaatttttt 241  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||    
T  35942386 tggatgtatagtaatgagatgatgatgatgttgttaatagttgttgcttcttaaattttt 35942327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 190 - 241
Target Start/End: Original strand, 47471343 - 47471391
Alignment:
Q  190 tagtaatgagatgatgatgatgttgttaatggttgttgtttcttaatttttt 241  Q
    ||||||||||||||||||||||||   |||||||||||||||||||||||||    
T  47471343 tagtaatgagatgatgatgatgtt---aatggttgttgtttcttaatttttt 47471391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 201 - 241
Target Start/End: Complemental strand, 47470959 - 47470919
Alignment:
Q  201 tgatgatgatgttgttaatggttgttgtttcttaatttttt 241  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  47470959 tgatgatgatgttgttaatggttgttgtttcttaaattttt 47470919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 241
Target Start/End: Original strand, 28539226 - 28539282
Alignment:
Q  182 tggaggtatagtaatgagatgatgatgatgttgttaatggttgttgtttcttaatttttt 241  Q
    |||| ||||||||||||||||||||||||||||   ||||||||| |||||||| |||||    
T  28539226 tggatgtatagtaatgagatgatgatgatgttg---atggttgttatttcttaaattttt 28539282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 233
Target Start/End: Original strand, 50838125 - 50838159
Alignment:
Q  199 gatgatgatgatgttgttaatggttgttgtttctt 233  Q
    |||||||||| ||||||||||||||||||||||||    
T  50838125 gatgatgatgttgttgttaatggttgttgtttctt 50838159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 119
Target Start/End: Original strand, 16110981 - 16111040
Alignment:
Q  63 agtgaacatatcctttgcattca---ttaatacctttgagaaaacaagctttctatgaga 119  Q
    ||||||||| ||| |||||||||   ||||||||||| |||||||| |||||||||||||    
T  16110981 agtgaacatgtcccttgcattcagctttaataccttttagaaaacaggctttctatgaga 16111040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 124 - 234
Target Start/End: Complemental strand, 3986864 - 3986751
Alignment:
Q  124 tgagaaaacaactttagatttatagctttaacttaggtggtgttattgttgttgatg---gtggaggtatagtaatgagatgatgatgatgttgttaatg 220  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||   |||||||| |||||||||||||||||||||| ||||||||    
T  3986864 tgagaaaacaactttaaatttataactttaacttaggtggtgttattgttgttgatggtggtggaggtgtagtaatgagatgatgatgatgatgttaatg 3986765  T
Q  221 gttgttgtttctta 234  Q
     |||||||||||||    
T  3986764 attgttgtttctta 3986751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 190 - 241
Target Start/End: Original strand, 36067965 - 36068016
Alignment:
Q  190 tagtaatgagatgatgatgatgttgttaatggttgttgtttcttaatttttt 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36067965 tagtaatgagatgatgatgatgttgttaatggttgttgtttcttaatttttt 36068016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 182 - 235
Target Start/End: Original strand, 32390658 - 32390712
Alignment:
Q  182 tggaggtatagtaatgagatgatgatgatgttgttaat-ggttgttgtttcttaa 235  Q
    |||||||  |||||||||||||||||||||||||| || ||||||||||||||||    
T  32390658 tggaggtgaagtaatgagatgatgatgatgttgttgataggttgttgtttcttaa 32390712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 235
Target Start/End: Original strand, 3987107 - 3987143
Alignment:
Q  199 gatgatgatgatgttgttaatggttgttgtttcttaa 235  Q
    |||||||||||| ||||||||||||||||||||||||    
T  3987107 gatgatgatgatattgttaatggttgttgtttcttaa 3987143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 235
Target Start/End: Complemental strand, 23256579 - 23256494
Alignment:
Q  155 cttaggtggtgttattgttgttgatggtgg----aggtatagtaatgagatgatgatgatgttgttaat-ggttgttgtttcttaa 235  Q
    ||||||| ||||||||||||||||||||||    ||||   |||||||||||||| | |||||||| || ||||||||||||||||    
T  23256579 cttaggtcgtgttattgttgttgatggtggttggaggtgacgtaatgagatgatggtaatgttgttgataggttgttgtttcttaa 23256494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 203 - 235
Target Start/End: Original strand, 30480579 - 30480611
Alignment:
Q  203 atgatgatgttgttaatggttgttgtttcttaa 235  Q
    |||||||||||||||||||||||||||||||||    
T  30480579 atgatgatgttgttaatggttgttgtttcttaa 30480611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 235
Target Start/End: Original strand, 41590251 - 41590314
Alignment:
Q  169 ttgttgttgatggtggaggtatagtaatgagatgatgatgatgttgttaatggttgttgtttcttaa 235  Q
    |||||| ||||||||||||| || ||||||   ||||||||||||||| || |||||||||||||||    
T  41590251 ttgttgatgatggtggaggtgtaataatga---gatgatgatgttgttgatagttgttgtttcttaa 41590314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 184
Target Start/End: Complemental strand, 32390323 - 32390290
Alignment:
Q  151 ttaacttaggtggtgttattgttgttgatggtgg 184  Q
    |||| |||||||||||||||||||||||||||||    
T  32390323 ttaatttaggtggtgttattgttgttgatggtgg 32390290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 202 - 235
Target Start/End: Complemental strand, 36067558 - 36067525
Alignment:
Q  202 gatgatgatgttgttaatggttgttgtttcttaa 235  Q
    ||||||| ||||||||||||||||||||||||||    
T  36067558 gatgatgttgttgttaatggttgttgtttcttaa 36067525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 235
Target Start/End: Original strand, 41590693 - 41590756
Alignment:
Q  169 ttgttgttgatggtggaggtatagtaatgagatgatgatgatgttgttaatggttgttgtttcttaa 235  Q
    |||||| || |||||||||| || ||||||   ||||||||||||||| || |||||||||||||||    
T  41590693 ttgttgatggtggtggaggtgtaataatga---gatgatgatgttgttgatagttgttgtttcttaa 41590756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 5e-37; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 125 - 238
Target Start/End: Complemental strand, 33003226 - 33003111
Alignment:
Q  125 gagaaaacaactttagatttatagctttaacttaggtggtgttattgttgttgatggtggagg---tatagtaatgagatgatgatgatgttgttaatgg 221  Q
    ||||||||||||||| |||| |||| |||||||||||||||||||||||||||||||||| ||   | ||||||||||||||||||||||||||||||||    
T  33003226 gagaaaacaacttta-atttctagcattaacttaggtggtgttattgttgttgatggtggtggagatgtagtaatgagatgatgatgatgttgttaatgg 33003128  T
Q  222 ttgttgtttcttaattt 238  Q
    |||||||||||||||||    
T  33003127 ttgttgtttcttaattt 33003111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 190 - 241
Target Start/End: Original strand, 10256347 - 10256398
Alignment:
Q  190 tagtaatgagatgatgatgatgttgttaatggttgttgtttcttaatttttt 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10256347 tagtaatgagatgatgatgatgttgttaatggttgttgtttcttaatttttt 10256398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 192 - 241
Target Start/End: Original strand, 4593261 - 4593310
Alignment:
Q  192 gtaatgagatgatgatgatgttgttaatggttgttgtttcttaatttttt 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4593261 gtaatgagatgatgatgatgttgttaatggttgttgtttcttaatttttt 4593310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 155 - 235
Target Start/End: Original strand, 45114607 - 45114691
Alignment:
Q  155 cttaggtggtgttattgttgttgatg---gtggaggtatagtaatgagatgatgatgatgttgttaat-ggttgttgtttcttaa 235  Q
    ||||||||||||||||||||||||||   ||||||||  ||| |||||||||||||||||||||| || ||||||||||||||||    
T  45114607 cttaggtggtgttattgttgttgatggttgtggaggtgaagtgatgagatgatgatgatgttgttgataggttgttgtttcttaa 45114691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 151 - 211
Target Start/End: Original strand, 33003537 - 33003600
Alignment:
Q  151 ttaacttaggtggtgttattgttgttgatggtgg---aggtatagtaatgagatgatgatgatg 211  Q
    ||||||||||||||||||||||||||||||||||   | |||||||||||||||||||||||||    
T  33003537 ttaacttaggtggtgttattgttgttgatggtggtgaatgtatagtaatgagatgatgatgatg 33003600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 156 - 207
Target Start/End: Original strand, 15765487 - 15765541
Alignment:
Q  156 ttaggtggtgttattgttgttgatg---gtggaggtatagtaatgagatgatgat 207  Q
    |||||||||||||||||||||||||   |||||||||||||||||||||||||||    
T  15765487 ttaggtggtgttattgttgttgatggtagtggaggtatagtaatgagatgatgat 15765541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 201 - 241
Target Start/End: Complemental strand, 10255934 - 10255894
Alignment:
Q  201 tgatgatgatgttgttaatggttgttgtttcttaatttttt 241  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  10255934 tgatgatgatgttgttaatggttgttgtttcttaaattttt 10255894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 241
Target Start/End: Original strand, 33003597 - 33003639
Alignment:
Q  199 gatgatgatgatgttgttaatggttgttgtttcttaatttttt 241  Q
    |||||||||||||||| ||||| ||||||||||||||| ||||    
T  33003597 gatgatgatgatgttgataatgattgttgtttcttaatatttt 33003639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 190 - 241
Target Start/End: Original strand, 33002 - 33053
Alignment:
Q  190 tagtaatgagatgatgatgatgttgttaatggttgttgtttcttaatttttt 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33002 tagtaatgagatgatgatgatgttgttaatggttgttgtttcttaatttttt 33053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 201 - 241
Target Start/End: Complemental strand, 32617 - 32577
Alignment:
Q  201 tgatgatgatgttgttaatggttgttgtttcttaatttttt 241  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  32617 tgatgatgatgttgttaatggttgttgtttcttaaattttt 32577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 190 - 241
Target Start/End: Original strand, 14791317 - 14791368
Alignment:
Q  190 tagtaatgagatgatgatgatgttgttaatggttgttgtttcttaatttttt 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14791317 tagtaatgagatgatgatgatgttgttaatggttgttgtttcttaatttttt 14791368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 201 - 241
Target Start/End: Original strand, 20112145 - 20112185
Alignment:
Q  201 tgatgatgatgttgttaatggttgttgtttcttaatttttt 241  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  20112145 tgatgatgatgttgttaatggttgttgtttcttaaattttt 20112185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 202 - 241
Target Start/End: Complemental strand, 20111755 - 20111716
Alignment:
Q  202 gatgatgatgttgttaatggttgttgtttcttaatttttt 241  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  20111755 gatgatgatgttgttaatcgttgttgtttcttaatttttt 20111716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 213
Target Start/End: Complemental strand, 21190413 - 21190351
Alignment:
Q  155 cttaggtggtgttattgttgttgatgg----tggaggtatagtaatgagatgatgatgatgtt 213  Q
    |||||||||||||||||||||||||||    |||||||  |||||||||||||||||| ||||    
T  21190413 cttaggtggtgttattgttgttgatggtggttggaggtgaagtaatgagatgatgatgttgtt 21190351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 190 - 241
Target Start/End: Complemental strand, 17732291 - 17732240
Alignment:
Q  190 tagtaatgagatgatgatgatgttgttaatggttgttgtttcttaatttttt 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17732291 tagtaatgagatgatgatgatgttgttaatggttgttgtttcttaatttttt 17732240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 190 - 241
Target Start/End: Original strand, 30710143 - 30710194
Alignment:
Q  190 tagtaatgagatgatgatgatgttgttaatggttgttgtttcttaatttttt 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30710143 tagtaatgagatgatgatgatgttgttaatggttgttgtttcttaatttttt 30710194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 190 - 241
Target Start/End: Complemental strand, 6008910 - 6008862
Alignment:
Q  190 tagtaatgagatgatgatgatgttgttaatggttgttgtttcttaatttttt 241  Q
    ||||||||||||||||||||||||   |||||||||||||||||||||||||    
T  6008910 tagtaatgagatgatgatgatgtt---aatggttgttgtttcttaatttttt 6008862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 199 - 241
Target Start/End: Original strand, 17732684 - 17732726
Alignment:
Q  199 gatgatgatgatgttgttaatggttgttgtttcttaatttttt 241  Q
    |||||||||| |||||||||||||||||||||||||| |||||    
T  17732684 gatgatgatgttgttgttaatggttgttgtttcttaaattttt 17732726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 235
Target Start/End: Original strand, 6009296 - 6009332
Alignment:
Q  199 gatgatgatgatgttgttaatggttgttgtttcttaa 235  Q
    |||||||||| ||||||||||||||||||||||||||    
T  6009296 gatgatgatgttgttgttaatggttgttgtttcttaa 6009332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 235
Target Start/End: Complemental strand, 18749081 - 18749025
Alignment:
Q  179 tggtggaggtatagtaatgagatgatgatgatgttgttaatggttgttgtttcttaa 235  Q
    |||| ||||| || |||||||||||||||| ||||||| ||| ||||||||||||||    
T  18749081 tggtagaggtgtaataatgagatgatgatgttgttgttgatgattgttgtttcttaa 18749025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 241
Target Start/End: Complemental strand, 30709754 - 30709714
Alignment:
Q  201 tgatgatgatgttgttaatggttgttgtttcttaatttttt 241  Q
    |||||||||||||||||||| ||||||||| |||| |||||    
T  30709754 tgatgatgatgttgttaatgattgttgttttttaaattttt 30709714  T

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Target: scaffold0169 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 156 - 235
Target Start/End: Complemental strand, 27080 - 26997
Alignment:
Q  156 ttaggtggtgttattgttgttgatggtgg---aggtatagtaatgagatgatgatgatgttgttaat-ggttgttgtttcttaa 235  Q
    |||||||||||||||||||||||||||||   ||||  |||||||||||||||||||||||||| || ||||||||||||||||    
T  27080 ttaggtggtgttattgttgttgatggtggtggaggtgaagtaatgagatgatgatgatgttgttgataggttgttgtttcttaa 26997  T

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