View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4713-Insertion-1 (Length: 962)

Name: NF4713-Insertion-1
Description: NF4713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4713-Insertion-1
NF4713-Insertion-1
[»] chr4 (17 HSPs)
chr4 (271-677)||(4635612-4636018)
chr4 (8-204)||(4636085-4636285)
chr4 (785-929)||(4635361-4635506)
chr4 (679-784)||(4635476-4635580)
chr4 (271-462)||(4642048-4642239)
chr4 (105-204)||(4632976-4633075)
chr4 (785-858)||(4641859-4641931)
chr4 (276-504)||(4631645-4631880)
chr4 (860-935)||(4641754-4641829)
chr4 (675-738)||(4641965-4642027)
chr4 (148-202)||(4642309-4642363)
chr4 (109-154)||(4643075-4643120)
chr4 (78-174)||(56367758-56367854)
chr4 (79-204)||(8946641-8946767)
chr4 (742-785)||(4641900-4641943)
chr4 (580-632)||(4631462-4631514)
chr4 (147-184)||(4633079-4633116)
[»] chr8 (1 HSPs)
chr8 (82-202)||(30702887-30703008)
[»] chr2 (1 HSPs)
chr2 (78-202)||(28917909-28918034)
[»] chr1 (2 HSPs)
chr1 (76-202)||(28623463-28623589)
chr1 (403-440)||(42577123-42577160)
[»] chr3 (2 HSPs)
chr3 (82-180)||(9014192-9014290)
chr3 (107-180)||(19116308-19116381)
[»] scaffold0027 (1 HSPs)
scaffold0027 (96-196)||(8644-8745)


Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-162; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 271 - 677
Target Start/End: Complemental strand, 4636018 - 4635612
Alignment:
Q  271 gatcatgtcaaacaaggcagttatcttaatccttttcatgtttaaactctaggacaccatgaacactcaaacatttcttgaaaaaactttgctcaatatg 370  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||  ||||||    
T  4636018 gatcatgtcaaacaaggcagttatcttaatccttttcatgtttaaactctagaacatcatgaacactcaaacattttttgaaaaaactttgcataatatg 4635919  T
Q  371 ttctatgatttctagtttaatgtaataaaatgaaaactaatgcttgtttaccaaaaacacatgtaaacaagcgccgaatatgcgcaaatcacttataaga 470  Q
    ||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||    
T  4635918 ttctatgatttctagtttaatgtaataaaattaaaactaacgtttgtttaccaaaaacacatgtaaacaaacgccgaatatgtgcaaatcacgtataaga 4635819  T
Q  471 tcctagttgaataattgaaatcataacacacaacatgccaactgtatgaatgattnnnnnnntggaaatgcatttgattggaggattattacttgatcct 570  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||       ||||||||| ||||||||||||||||||||||||||||    
T  4635818 tcctagttgaataattgaaatcataacacacaacatgccaactgtatgaacgattaaaaaaatggaaatgcttttgattggaggattattacttgatcct 4635719  T
Q  571 ccttatatttcttgtccataatataattgattgtgcacagtttttaacatttgtaaactaatnnnnnnnnnnnnctcaatccatattaacattaaaatat 670  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||    
T  4635718 ccttgtatttcttgtccataatataattgattgtgcacagtttttaacatttgtaaactaataaaaaataaaaactcaatccatattaacattaaaatat 4635619  T
Q  671 tcacaac 677  Q
     ||||||    
T  4635618 gcacaac 4635612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 147; E-Value: 5e-77
Query Start/End: Original strand, 8 - 204
Target Start/End: Complemental strand, 4636285 - 4636085
Alignment:
Q  8 aagatttgcagtttaggaccgttatttttcagttatttcttattatgtatatatnnnnnnnt----ttataggaaaataagggtcacaaatcaaatacaa 103  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||||    
T  4636285 aagatttgcagtttaggactgttatttttcagttatttcttattatgtatatatataaaaaaaaaattataggaaaataagggtcacaaatcaaatacaa 4636186  T
Q  104 aattctttatgctcgaactatccaagttatcgcgagaaaagagtaacaagacaatatatgtgtgatttgatgtaccaatttcatttatgcaatgcaaatc 203  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  4636185 aattctttatgctcgaactatccaagttatcgtgagaaaagagtaacaagacaatatatgtgtgatttgatgtaccaatttcatttatgcactgcaaatc 4636086  T
Q  204 a 204  Q
    |    
T  4636085 a 4636085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 785 - 929
Target Start/End: Complemental strand, 4635506 - 4635361
Alignment:
Q  785 atgaactattaaaaaatatgtaacgagtaatggatgcaa-gactttctgaaaaatttaataaaatatataaacgattgccaactaacatgatttacatgt 883  Q
    ||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||    
T  4635506 atgaactattaaaaaatatgtaacgtgtaatggatgcaaagactttctgaaaaaattaataaaatatataaacgaatgctaactaacatgatttacatgt 4635407  T
Q  884 tcttgtccaaaatgtaatttcatgcatgtgccatatgcacagtttt 929  Q
    |||||||||||||||||||||||||||||||| |||||||||||||    
T  4635406 tcttgtccaaaatgtaatttcatgcatgtgccgtatgcacagtttt 4635361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 679 - 784
Target Start/End: Complemental strand, 4635580 - 4635476
Alignment:
Q  679 aacatttcctcgccgaacacgagcggatcacagatatgtaacacgagcgggaacacacaacgtattgccaatttcatgaactattaaaaaatatgtaacg 778  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||    
T  4635580 aacatttcctcgccgaacacgagcggatcacgaatatgtaacacgagcag-aacacacaacgtattgccaatttcatgaactattaaaaaatatgtaacg 4635482  T
Q  779 agtaat 784  Q
     |||||    
T  4635481 tgtaat 4635476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 271 - 462
Target Start/End: Complemental strand, 4642239 - 4642048
Alignment:
Q  271 gatcatgtcaaacaaggcagttatcttaatccttttcatgtttaaactctaggacaccatgaacactcaaacatttcttgaaaaaactttgctcaatatg 370  Q
    |||||||||||| ||| || ||||||| || |||||||||||||||||| || ||||||| | ||||||||||||| | ||||||  ||||| || ||||    
T  4642239 gatcatgtcaaataagacaattatcttcatacttttcatgtttaaactcaagaacaccataagcactcaaacatttttggaaaaacttttgcacagtatg 4642140  T
Q  371 ttctatgatttctagtttaatgtaataaaatgaaaactaatgcttgtttaccaaaaacacatgtaaacaagcgccgaatatgcgcaaatcac 462  Q
    ||  | |||||||| ||| |||||||||||| |||| ||| | ||||||||||||| |||  |||||||| | | ||||||| ||| |||||    
T  4642139 ttggacgatttctattttgatgtaataaaattaaaattaaagtttgtttaccaaaagcaccggtaaacaaacactgaatatgtgcagatcac 4642048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 105 - 204
Target Start/End: Complemental strand, 4633075 - 4632976
Alignment:
Q  105 attctttatgctcgaactatccaagttatcgcgagaaaagagtaacaagacaatatatgtgtgatttgatgtaccaatttcatttatgcaatgcaaatca 204  Q
    ||||||||||||||||  ||| ||||||||| || |||| | |||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  4633075 attctttatgctcgaataatcaaagttatcgtgacaaaatattaacaagataatgtatgtgtgatttggtgtaccaatttcatttatgcaatgcaaatca 4632976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 785 - 858
Target Start/End: Complemental strand, 4641931 - 4641859
Alignment:
Q  785 atgaactattaaaaaatatgtaacgagtaatggatgcaagactttctgaaaaatttaataaaatatataaacga 858  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||    
T  4641931 atgaactattaaaaaatatgtaacgagtaatagatgcaagactttccgaaaaatttaat-aaatatataaacga 4641859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 276 - 504
Target Start/End: Complemental strand, 4631880 - 4631645
Alignment:
Q  276 tgtcaaacaaggcagttatcttaatccttttcatgtttaaactctaggacaccatgaacactcaaacatttcttgaaaaaactttgctcaatatgttcta 375  Q
    |||| |||| |||||||||||| ||| ||||||||||||||||| |  ||||||| |||| ||||| ||||  || ||||  ||||| ||||||||| ||    
T  4631880 tgtcgaacatggcagttatcttcatcattttcatgtttaaactcaaaaacaccataaacagtcaaatattttatgcaaaacttttgcacaatatgtttta 4631781  T
Q  376 tgatttctagtttaat-------gtaataaaatgaaaactaatgcttgtttaccaaaaacacatgtaaacaagcgccgaatatgcgcaaatcacttataa 468  Q
    ||||||||||||| ||       || ||||||| |||||||| | |||||||  ||||||||   ||| ||  || |||| ||| ||||||||  ||||     
T  4631780 tgatttctagtttgattttataagttataaaattaaaactaacggttgtttaataaaaacactgataatcacacgtcgaaaatgtgcaaatcaggtatac 4631681  T
Q  469 gatcctagttgaataattgaaatcataacacacaac 504  Q
     || ||||||||||||||||||||||| ||||||||    
T  4631680 tatgctagttgaataattgaaatcatatcacacaac 4631645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 860 - 935
Target Start/End: Complemental strand, 4641829 - 4641754
Alignment:
Q  860 tgccaactaacatgatttacatgttcttgtccaaaatgtaatttcatgcatgtgccatatgcacagtttttaacta 935  Q
    |||||||||||||| ||| |||||||||  ||||||||||||| |||||||||| |||||||||||||||||||||    
T  4641829 tgccaactaacatgcttttcatgttctttcccaaaatgtaattgcatgcatgtgtcatatgcacagtttttaacta 4641754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 675 - 738
Target Start/End: Complemental strand, 4642027 - 4641965
Alignment:
Q  675 aaccaacatttcctcgccgaacacgagcggatcacagatatgtaacacgagcgggaacacacaa 738  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||    
T  4642027 aaccaacatttcctcgccgaacacgagcggatcacatatatgtaacacgagc-ggaacacacaa 4641965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 148 - 202
Target Start/End: Complemental strand, 4642363 - 4642309
Alignment:
Q  148 aacaagacaatatatgtgtgatttgatgtaccaatttcatttatgcaatgcaaat 202  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  4642363 aacaagacaatatatgtgtgatttggtgtaccaatttcatttatgcaatgcaaat 4642309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 109 - 154
Target Start/End: Complemental strand, 4643120 - 4643075
Alignment:
Q  109 tttatgctcgaactatccaagttatcgcgagaaaagagtaacaaga 154  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  4643120 tttatgctcgaactatccaagttatcgcgagaaaagagtaacaaga 4643075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 78 - 174
Target Start/End: Original strand, 56367758 - 56367854
Alignment:
Q  78 aaataagggtcacaaatcaaatacaaaattctttatgctcgaactatccaagttatcgcgagaaaagagtaacaagacaatatatgtgtgatttgat 174  Q
    ||||| ||||||||||||||||||| ||| |||||| ||| || |||||||||||   | ||||||||||||| ||| ||| |||||||||||||||    
T  56367758 aaataggggtcacaaatcaaatacataatcctttatactcaaagtatccaagttacaacaagaaaagagtaacgagataatgtatgtgtgatttgat 56367854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 79 - 204
Target Start/End: Complemental strand, 8946767 - 8946641
Alignment:
Q  79 aataagggtcacaaatcaaatacaaaattctttatgctcgaactatccaagttatcgcgagaaaagagtaacaagacaatatatgtgtgatttgatgtac 178  Q
    ||||||||||| |||||| | ||| |  ||||||||||| || ||||||||| | || ||||||||||||| ||||||||  |||| |||||||||| ||    
T  8946767 aataagggtcataaatcataaacatatatctttatgctctaaatatccaagtgaccgggagaaaagagtaagaagacaatgaatgtttgatttgatgaac 8946668  T
Q  179 ca-atttcatttatgcaatgcaaatca 204  Q
    ||  ||| | |||||||||||||||||    
T  8946667 catcttttacttatgcaatgcaaatca 8946641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 742 - 785
Target Start/End: Complemental strand, 4641943 - 4641900
Alignment:
Q  742 attgccaatttcatgaactattaaaaaatatgtaacgagtaata 785  Q
    |||||||| |||||||||||||||||||||||||||||||||||    
T  4641943 attgccaacttcatgaactattaaaaaatatgtaacgagtaata 4641900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 580 - 632
Target Start/End: Complemental strand, 4631514 - 4631462
Alignment:
Q  580 tcttgtccataatataattgattgtgcacagtttttaacatttgtaaactaat 632  Q
    ||||||||||||||||||||| |||||||||||| |||| || ||||| ||||    
T  4631514 tcttgtccataatataattgaatgtgcacagtttctaaccttcgtaaattaat 4631462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 184
Target Start/End: Complemental strand, 4633116 - 4633079
Alignment:
Q  147 taacaagacaatatatgtgtgatttgatgtaccaattt 184  Q
    |||||||||||| ||||||||||||| |||||||||||    
T  4633116 taacaagacaatgtatgtgtgatttggtgtaccaattt 4633079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 1e-28; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 82 - 202
Target Start/End: Complemental strand, 30703008 - 30702887
Alignment:
Q  82 aagggtcacaaatcaaatacaaaattctttatgctcgaactatccaagttatcgcgagaaaagagtaacaagacaatatatgtgtgatttgatgtaccaa 181  Q
    |||||||| |||||||||||||||||||||||||||||| |||||||||||  | ||||||||| |||||| ||||| ||||||||||||| || || ||    
T  30703008 aagggtcaaaaatcaaatacaaaattctttatgctcgaaatatccaagttaaggtgagaaaagattaacaaaacaatgtatgtgtgatttgttgaactaa 30702909  T
Q  182 -tttcatttatgcaatgcaaat 202  Q
     |||||| ||||||||||||||    
T  30702908 ctttcatatatgcaatgcaaat 30702887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 2e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 78 - 202
Target Start/End: Original strand, 28917909 - 28918034
Alignment:
Q  78 aaataagggtcacaaatcaaatacaaaattctttatgctcgaactatccaagttatcgcgagaaaagagtaacaagacaatatatgtgtgatttgatgta 177  Q
    |||||| ||| ||| ||||||||||  |||||||||||||||| |||||||||||   ||||||||  ||| ||||| ||| ||||||||||||| ||||    
T  28917909 aaataatggttacagatcaaatacatgattctttatgctcgaaatatccaagttacaacgagaaaattgtatcaagataatgtatgtgtgatttggtgta 28918008  T
Q  178 ccaa-tttcatttatgcaatgcaaat 202  Q
    |||| |||| ||||||||||||||||    
T  28918009 ccaactttcgtttatgcaatgcaaat 28918034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 76 - 202
Target Start/End: Complemental strand, 28623589 - 28623463
Alignment:
Q  76 gaaaataagggtcacaaatcaaatacaaaattctttatgctcgaactatccaagttatcgcgagaaaagagtaacaagacaatatatgtgtgatttgatg 175  Q
    ||||||||| |||| |||||| || |||||||||| |||||| || |||||||| |  |  |||||||| |||||||||||||  |||  ||||||||||    
T  28623589 gaaaataagagtcataaatcatatccaaaattcttcatgctcaaattatccaagctg-caagagaaaagtgtaacaagacaatgaatgcttgatttgatg 28623491  T
Q  176 taccaa-tttcatttatgcaatgcaaat 202  Q
     ||||| |||||||||||||||||||||    
T  28623490 aaccaactttcatttatgcaatgcaaat 28623463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 403 - 440
Target Start/End: Original strand, 42577123 - 42577160
Alignment:
Q  403 aaaactaatgcttgtttaccaaaaacacatgtaaacaa 440  Q
    |||||||||| ||||||||||||||||| |||||||||    
T  42577123 aaaactaatgattgtttaccaaaaacacctgtaaacaa 42577160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 82 - 180
Target Start/End: Complemental strand, 9014290 - 9014192
Alignment:
Q  82 aagggtcacaaatcaaatacaaaattctttatgctcgaactatccaagttatcgcgagaaaagagtaacaagacaatatatgtgtgatttgatgtacca 180  Q
    |||||||||||||   ||| | ||||||| |||||| |||||||||| |||| | |||||||||||||| ||||||| ||||| |||||||||| ||||    
T  9014290 aagggtcacaaatattatagagaattcttcatgctcaaactatccaacttatagagagaaaagagtaactagacaatgtatgtttgatttgatgaacca 9014192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 107 - 180
Target Start/End: Complemental strand, 19116381 - 19116308
Alignment:
Q  107 tctttatgctcgaactatccaagttatcgcgagaaaagagtaacaagacaatatatgtgtgatttgatgtacca 180  Q
    |||||||||||||| || |||||| |    |||||||||||||||||||||| ||||| |||||||||||||||    
T  19116381 tctttatgctcgaaatagccaagtcacaaagagaaaagagtaacaagacaatgtatgtttgatttgatgtacca 19116308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 96 - 196
Target Start/End: Original strand, 8644 - 8745
Alignment:
Q  96 aaatacaaaattctttatgctcgaactatccaagttatcgcgagaaaagagtaacaagacaatatatgtgtgatttgatgtaccaattt-catttatgca 194  Q
    |||||| ||| |||||| | || || |||||||||||  | |||||||||||||||||| ||| ||||| |||||| |||||||| ||| ||||||||||    
T  8644 aaatactaaaatctttacgttcaaagtatccaagttacagtgagaaaagagtaacaagaaaatgtatgtatgatttaatgtaccagtttacatttatgca 8743  T
Q  195 at 196  Q
    ||    
T  8744 at 8745  T

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