View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4713-Insertion-11 (Length: 174)
Name: NF4713-Insertion-11
Description: NF4713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4713-Insertion-11 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 147; Significance: 9e-78; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 147; E-Value: 9e-78
Query Start/End: Original strand, 8 - 174
Target Start/End: Original strand, 13024831 - 13024997
Alignment:
| Q |
8 |
aaaatcaggtgtctggttgtaattagtgatgtaagaaagagatccatttaattccaccaatcccattttcatccgtttatattttatatctgagttagag |
107 |
Q |
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| T |
13024831 |
aaaatcaggcgtctggttgtaattagtgatgtaagaaagagatccatctaattccaccaatcccattttcatctgtttatattttatatctgagttagag |
13024930 |
T |
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| Q |
108 |
ggtaatggtgttgcaacgaatgtctctttgctaaagtcaaacgacaccataacaggtccttcaatcg |
174 |
Q |
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| T |
13024931 |
ggtaatggtgttgcaacgaatgtctctttggtaaagtcaaacaacaccataacaggtccttcaatcg |
13024997 |
T |
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Target: chr8; HSP #2
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 117 - 168
Target Start/End: Complemental strand, 18096599 - 18096548
Alignment:
| Q |
117 |
gttgcaacgaatgtctctttgctaaagtcaaacgacaccataacaggtcctt |
168 |
Q |
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| T |
18096599 |
gttgcaacgaatgtctccttgctaaagtcgaaggacactacatcaggtcctt |
18096548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 28; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 83 - 158
Target Start/End: Original strand, 35011881 - 35011956
Alignment:
| Q |
83 |
tttatattttatatctgagttagagggtaatggtgttgcaacgaatgtctctttgctaaagtcaaacgacaccata |
158 |
Q |
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| T |
35011881 |
tttatatattacgtctgagtgagagggtaaggtagatgcaaagaatgtctctttggtgaagtcaaatgacaccata |
35011956 |
T |
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