View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4713-Insertion-13 (Length: 117)
Name: NF4713-Insertion-13
Description: NF4713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4713-Insertion-13 |
 | |
|
| [»] chr1 (3 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 103; Significance: 1e-51; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 1e-51
Query Start/End: Original strand, 7 - 117
Target Start/End: Original strand, 24889921 - 24890031
Alignment:
| Q |
7 |
agcaagtaaattaaaaggtatgcaacgagaattcatccaagactttgaatgcaatttaagaatctcccttgctttctcctttgccttatttccactatca |
106 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24889921 |
agcaagtaaattaaaaggtatgcaatgagaattcatccaagactttgaatgcaatttaagaatctcccttgctttctcctttgccttatttccactatca |
24890020 |
T |
|
| Q |
107 |
acttgtagaac |
117 |
Q |
| |
|
||||| ||||| |
|
|
| T |
24890021 |
acttgaagaac |
24890031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 1e-51
Query Start/End: Original strand, 7 - 117
Target Start/End: Complemental strand, 24900046 - 24899936
Alignment:
| Q |
7 |
agcaagtaaattaaaaggtatgcaacgagaattcatccaagactttgaatgcaatttaagaatctcccttgctttctcctttgccttatttccactatca |
106 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24900046 |
agcaagtaaattaaaaggtatgcaatgagaattcatccaagactttgaatgcaatttaagaatctcccttgctttctcctttgccttatttccactatca |
24899947 |
T |
|
| Q |
107 |
acttgtagaac |
117 |
Q |
| |
|
||||| ||||| |
|
|
| T |
24899946 |
acttgaagaac |
24899936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 103; E-Value: 1e-51
Query Start/End: Original strand, 7 - 117
Target Start/End: Complemental strand, 24907505 - 24907395
Alignment:
| Q |
7 |
agcaagtaaattaaaaggtatgcaacgagaattcatccaagactttgaatgcaatttaagaatctcccttgctttctcctttgccttatttccactatca |
106 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24907505 |
agcaagtaaattaaaaggtatgcaatgagaattcatccaagactttgaatgcaatttaagaatctcccttgctttctcctttgccttatttccactatca |
24907406 |
T |
|
| Q |
107 |
acttgtagaac |
117 |
Q |
| |
|
||||| ||||| |
|
|
| T |
24907405 |
acttgaagaac |
24907395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 117
Target Start/End: Complemental strand, 43263646 - 43263591
Alignment:
| Q |
62 |
ttaagaatctcccttgctttctcctttgccttatttccactatcaacttgtagaac |
117 |
Q |
| |
|
||||| |||||||||||||||||||| | |||| |||||| ||||||||| ||||| |
|
|
| T |
43263646 |
ttaagtatctcccttgctttctccttagtcttacttccacaatcaacttgaagaac |
43263591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University