View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4713-Insertion-3 (Length: 770)
Name: NF4713-Insertion-3
Description: NF4713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4713-Insertion-3 |
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Alignment Details
Target: chr2 (Bit Score: 393; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 207 - 639
Target Start/End: Complemental strand, 32562170 - 32561738
Alignment:
| Q |
207 |
cttttctcggtattactaacattattaaagaaaaggcatgtacaaattagaaacctatataatacatctaatattttaagtgcttgttttgaaactttct |
306 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32562170 |
cttttctcggtattactaacattattaaagaaaatgcatgtacaaattagaaacctatataatacatctaatattttaagtgcttgttttgaaactttct |
32562071 |
T |
|
| Q |
307 |
tggatagaatctcacgaaccctgtaaacactaaagaggaagtgaaaaaagaaaactaaataagttcacacagaagatggcaacaatgcaaatggaagcga |
406 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
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| T |
32562070 |
tggatagaatgtcacgaaccctgtaaacactaaagaggaagtgaaaaaagaaaactaaataagttcacacagaagatggtaacaaggcaaatggaagcga |
32561971 |
T |
|
| Q |
407 |
ttcagaagaaattggcaatgctaaattactcacgagcgaatgcccctgcacagtctctcctattttctggcatggagcgctatgcccttttggaatggct |
506 |
Q |
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| T |
32561970 |
ttcagaagaaattggcaatgctaaattactcacgagcgaatgcccctgcacagtctctcctattttctagcatggagcgctatgcccttttggaatggct |
32561871 |
T |
|
| Q |
507 |
cttctttcggtatcttcttttctttgactgttaatcacgattctcattttgagctgtgagggaatttttgaaaacaagttattggaaactgtaattctta |
606 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||| |
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| T |
32561870 |
cttctttcggtatcttcttttctttgactgctaatcacgattctcattttgagctatgagggaatttttgaaaacaagttaatggaaactggaattctta |
32561771 |
T |
|
| Q |
607 |
gatcttagatttgagtagttgttttttgtacat |
639 |
Q |
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| T |
32561770 |
gatcttagatttgagtagttgttttttgcacat |
32561738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 683 - 768
Target Start/End: Complemental strand, 32561744 - 32561659
Alignment:
| Q |
683 |
tgcacattttttagcggccatccagagctaaaagtaggagggtggaaaaatgggcaattgaaaatttggaatataaacttattttg |
768 |
Q |
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| T |
32561744 |
tgcacattttttagcagccatccagagctaaaagtaggagggtggaaaaatgggcaattgaaaatttggaatataaacttattttg |
32561659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 1e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 377 - 529
Target Start/End: Original strand, 5305572 - 5305724
Alignment:
| Q |
377 |
agaagatggcaacaatgcaaatggaagcgattcagaagaaattggcaatgctaaattactcacgagcgaatgcccctgcacagtctctcctattttctgg |
476 |
Q |
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||||||||||| ||| ||||||||||| ||||||||||||||| | |||||||||||| || | || ||||| |||| ||||| || ||||| |||| |
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| T |
5305572 |
agaagatggcatcaaagcaaatggaagtgattcagaagaaattaggaatgctaaattatccaagggcaaatgcatctgcccagtcccttttatttgctgg |
5305671 |
T |
|
| Q |
477 |
catggagcgctatgcccttttggaatggctcttctttcggtatcttcttttct |
529 |
Q |
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| T |
5305672 |
catggagcgctatgccctttttgaatggctcttctttcggtatcttcttttct |
5305724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 377 - 529
Target Start/End: Original strand, 20366169 - 20366321
Alignment:
| Q |
377 |
agaagatggcaacaatgcaaatggaagcgattcagaagaaattggcaatgctaaattactcacgagcgaatgcccctgcacagtctctcctattttctgg |
476 |
Q |
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|
||||||||||| ||| |||||||||||| |||||||||||||| | ||||||||| || || | || ||||| |||| ||||| || ||||| |||| |
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| T |
20366169 |
agaagatggcatcaaagcaaatggaagctattcagaagaaattaggaatgctaaactatccaagggcaaatgcatctgctcagtcccttttatttgctgg |
20366268 |
T |
|
| Q |
477 |
catggagcgctatgcccttttggaatggctcttctttcggtatcttcttttct |
529 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
20366269 |
catggagcgctatgccctttttgaatggctcttctttcggtatcttcttttct |
20366321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 377 - 540
Target Start/End: Original strand, 20408107 - 20408270
Alignment:
| Q |
377 |
agaagatggcaacaatgcaaatggaagcgattcagaagaaattggcaatgctaaattactcacgagcgaatgcccctgcacagtctctcctattttctgg |
476 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||||||||||| | |||||||||||| || | || ||||| |||| ||||| || ||||| |||| |
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| T |
20408107 |
agaagatggcatcaaagcaaatggaagcgattcagaagaaattaggaatgctaaattatccaagggcaaatgcatctgctcagtcccttttatttgctgg |
20408206 |
T |
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| Q |
477 |
catggagcgctatgcccttttggaatggctcttctttcggtatcttcttttctttgactgttaa |
540 |
Q |
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| T |
20408207 |
catggagcgctatgcccttctcgagtggctattctttcggtatcttcctttctttctctgttaa |
20408270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 377 - 518
Target Start/End: Original strand, 17841278 - 17841419
Alignment:
| Q |
377 |
agaagatggcaacaatgcaaatggaagcgattcagaagaaattggcaatgctaaattactcacgagcgaatgcccctgcacagtctctcctattttctgg |
476 |
Q |
| |
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||||||||||| ||| ||||||||||||||||||||||||||| | ||| |||||||| || | | ||||| |||| ||||| || ||||| |||| |
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| T |
17841278 |
agaagatggcatcaaagcaaatggaagcgattcagaagaaattaggaattctaaattatccaaggtcaaatgcatctgctcagtcccttttatttgctgg |
17841377 |
T |
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| Q |
477 |
catggagcgctatgcccttttggaatggctcttctttcggta |
518 |
Q |
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||||||||||||||||||| | || ||||| ||||||||||| |
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| T |
17841378 |
catggagcgctatgcccttctcgagtggctattctttcggta |
17841419 |
T |
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