View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4713-Insertion-4 (Length: 562)
Name: NF4713-Insertion-4
Description: NF4713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4713-Insertion-4 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 183 - 562
Target Start/End: Complemental strand, 2572737 - 2572354
Alignment:
| Q |
183 |
ttacatgatttggctctatattctattgtgatttgaggcaaccttagaggataagatccttaaaagccattgcatatccttaaaaagcatcacaaaacgt |
282 |
Q |
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| T |
2572737 |
ttacatgatttgactctatattctattgtgatttgaggcaaccttagaggataagatccttaaaagccattgcatatccttaaaaaggatcacaaaacgt |
2572638 |
T |
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| Q |
283 |
gtctatgatgactaggtgagtgttttagttttaaa-ttagtgtgatc---tatatttagttttaaatttggatttttctatgcgtcactttaggttcaat |
378 |
Q |
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| T |
2572637 |
gtctatgatgactaggtgagtgttttagttttaaatttagtgtgatctattatatttagttttaaatttggatttttctatgcgtcactttaggttcaat |
2572538 |
T |
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| Q |
379 |
gtattttttatcaagttccttcatttattgaagtacgtcttctattttggttctttctaagtaacannnnnnnnccaaatttgaaacgtaatcaataatt |
478 |
Q |
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| T |
2572537 |
gtattttttatcaagttccttcatttattgaagtacgtcttctattttggttctttctaagtcacattttttttccaaatttgaaacgtaatcaataatt |
2572438 |
T |
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| Q |
479 |
ttaattttagggaaaatctgacctggaaagatatgtgattatcctttggattaatttccttcttccttggtaacgtctctgggt |
562 |
Q |
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| T |
2572437 |
ttaagtttagggaaaatctgacctggaaagatatgtgattatcctttggattaatttccttcttccttggtaacgtctctgggt |
2572354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 11 - 169
Target Start/End: Complemental strand, 2572944 - 2572777
Alignment:
| Q |
11 |
ttactacagttgcatgatgtagtaccattaaattaagaaagttgcatagtaatattttttggagctttaaatacgaaaaaatgaagtgtccaaagtatga |
110 |
Q |
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| T |
2572944 |
ttactacaattgcatgatgtagtaccattaaattaagaaagttgcatagtaatattttttggagctttaaatatgaaaaaatgtagtgtccagagtttga |
2572845 |
T |
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| Q |
111 |
acctcggttgctgc-----ttatggattgtcc----ctatcaaccgaggaaagctcacatgaactaat |
169 |
Q |
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| T |
2572844 |
atctcgattgctacatatattatggattgtccctatctatcaaccgaggaaagctcacatgaactaat |
2572777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 500 - 548
Target Start/End: Original strand, 44546148 - 44546196
Alignment:
| Q |
500 |
cctggaaagatatgtgattatcctttggattaatttccttcttccttgg |
548 |
Q |
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| T |
44546148 |
cctggaatgagatatgattatcctttgtattaatttccttcttccttgg |
44546196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 508 - 548
Target Start/End: Original strand, 44555771 - 44555811
Alignment:
| Q |
508 |
gatatgtgattatcctttggattaatttccttcttccttgg |
548 |
Q |
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| T |
44555771 |
gatatatgattatcctttggattaatttcgttcttccttgg |
44555811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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