View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4713-Insertion-5 (Length: 480)
Name: NF4713-Insertion-5
Description: NF4713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4713-Insertion-5 |
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Alignment Details
Target: chr6 (Bit Score: 170; Significance: 5e-91; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 8 - 181
Target Start/End: Complemental strand, 25988654 - 25988481
Alignment:
| Q |
8 |
aaactcacactccctatttatagtggcgctaaccgcaaatagcgataagtaaggaagcacattggatgtccattatagatcttcttaacaaataatgtcg |
107 |
Q |
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| T |
25988654 |
aaactcacactccctatttatagtggcgctaaccgcaaatagcgataagtaaggaagcacattggatgtccattatagaccttcttaacaaataatgtcg |
25988555 |
T |
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| Q |
108 |
tgaagtggaaagttggtaaccgagaatggggagctacgaacccctcaacaaaggaaactaagacaaacaaggat |
181 |
Q |
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| T |
25988554 |
tgaagtggaaagttggtaaccgagaatggggagctacgaacccctcaacaaaggaaactaagacaaacaaggat |
25988481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 379 - 480
Target Start/End: Complemental strand, 25988458 - 25988357
Alignment:
| Q |
379 |
gtcatggagttggagtctagacgagccaattttggtgacaattatgtcacctacacctcatacaaagatgtctcgcagactttgtcaatcaaattcaatt |
478 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
25988458 |
gtcatggagttggagtctagacgagccaattttggtgacaattatgtcacctatacctcatataaagatgtctcgcagactttgtcaatcaaattcaatt |
25988359 |
T |
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| Q |
479 |
ga |
480 |
Q |
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|| |
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| T |
25988358 |
ga |
25988357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 88 - 166
Target Start/End: Complemental strand, 25320969 - 25320891
Alignment:
| Q |
88 |
cttcttaacaaataatgtcgtgaagtggaaagttggtaaccgagaatggggagctacgaacccctcaacaaaggaaact |
166 |
Q |
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| T |
25320969 |
cttcttaacaaataatgtcgtgaagtggaaagttggtaaccgagaatggggagctacgaacccctcaacaaaggaaact |
25320891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 88 - 166
Target Start/End: Complemental strand, 26150662 - 26150584
Alignment:
| Q |
88 |
cttcttaacaaataatgtcgtgaagtggaaagttggtaaccgagaatggggagctacgaacccctcaacaaaggaaact |
166 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26150662 |
cttcttaacaaataatgtcgtgaagtggaaagttggtaaccgagaatggggagctacgaacccctcaacaaaggaaact |
26150584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 8 - 36
Target Start/End: Complemental strand, 25321003 - 25320975
Alignment:
| Q |
8 |
aaactcacactccctatttatagtggcgc |
36 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
25321003 |
aaactcacactccctatttatagtggcgc |
25320975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 8 - 36
Target Start/End: Complemental strand, 26150696 - 26150668
Alignment:
| Q |
8 |
aaactcacactccctatttatagtggcgc |
36 |
Q |
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| T |
26150696 |
aaactcacactccctatttatagtggcgc |
26150668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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