View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4713-Insertion-7 (Length: 480)
Name: NF4713-Insertion-7
Description: NF4713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4713-Insertion-7 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 8 - 480
Target Start/End: Complemental strand, 25884455 - 25883983
Alignment:
| Q |
8 |
gcacaaacatcatggattcagaatgtaaccatcaaagaaaacatattgttcggtttaccaatgaacttggacaagtacagggaagctttaagggtgtgct |
107 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25884455 |
gcacaaacatcatggattcagaatgcaaccatcaaagaaaacatattgttcggtttaccaatgaacttggacaagtacagggaagctttaagggtgtgct |
25884356 |
T |
|
| Q |
108 |
gccttgaaaaggatcttgaaatgatggaagatggtgacggaaccgagattggagaacgcggtattaacctcagtggaggccagaaacaacgtgtgcaact |
207 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25884355 |
gccttgaaaaggatcttgaaatgatggaagatggtgatggaaccgagattggagaacgcggtattaacctcagtggaggccagaaacaacgtgtgcaact |
25884256 |
T |
|
| Q |
208 |
agctagagctgtgtatcaggacactgacatttatctccttgatgatatattcagtgctgttgatgctcaaacaggatcgtttatttttaaagtaagaaca |
307 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25884255 |
agctagagctgtgtatcaggacactgacatctatctccttgatgatatattcagtgctgttgatgctcaaacaggatcgtttatttttaaagtaagaaca |
25884156 |
T |
|
| Q |
308 |
aagataaaattcatagtttttatgatgtaacaaattgattttcattataaatgaattgtaagttttaaatttctaatacaaataacaaccgatcctctat |
407 |
Q |
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||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |
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| T |
25884155 |
aagctaaaattcatagtttttatgatataacaaattgattttcattataaatgaattgtcagttttaaatttctaatacaaataacaaccgattctctat |
25884056 |
T |
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| Q |
408 |
ctttttgcaggaatgtatcatgggagctctgaaagataagacggttttacttgtaacacaccaagttgatttc |
480 |
Q |
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| T |
25884055 |
ctttttgcaggaatgtatcatgggagctctgaaagataagacggttttacttgtaacacaccaagttgatttc |
25883983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 7 - 303
Target Start/End: Complemental strand, 14319275 - 14318979
Alignment:
| Q |
7 |
agcacaaacatcatggattcagaatgtaaccatcaaagaaaacatattgttcggtttaccaatgaacttggacaagtacagggaagctttaagggtgtgc |
106 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||| |||||||||||| ||||||| |||||| |
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| T |
14319275 |
agcacaaacatcatggattcagaatgcaaccatcaaagaaaacatattgtttggcttaccaatgaacttggaaaagtacagggaaactttaagagtgtgc |
14319176 |
T |
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| Q |
107 |
tgccttgaaaaggatcttgaaatgatggaagatggtgacggaaccgagattggagaacgcggtattaacctcagtggaggccagaaacaacgtgtgcaac |
206 |
Q |
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| T |
14319175 |
tgccttgaaaaggatcttgaaatgatggaagatggtgatgaaactgagattggagagcgaggtattaacctcagtggtggccagaaacaacgggtacaac |
14319076 |
T |
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| Q |
207 |
tagctagagctgtgtatcaggacactgacatttatctccttgatgatatattcagtgctgttgatgctcaaacaggatcgtttatttttaaagtaag |
303 |
Q |
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| T |
14319075 |
ttgctagagctgtatatcatgacactgacatctatctccttgatgatgtattcagtgctgttgatgctgaaacaggatcatttatttttaaggtaag |
14318979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 7 - 310
Target Start/End: Complemental strand, 14302827 - 14302524
Alignment:
| Q |
7 |
agcacaaacatcatggattcagaatgtaaccatcaaagaaaacatattgttcggtttaccaatgaacttggacaagtacagggaagctttaagggtgtgc |
106 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||| |||| ||||||| ||||||| |||| |||||| |
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| T |
14302827 |
agcacaaacatcatggattcagaatgcaaccatcaaagaaaacatattgtttggtttgccaatgaacatggaaaagtacaaggaagctctaagagtgtgc |
14302728 |
T |
|
| Q |
107 |
tgccttgaaaaggatcttgaaatgatggaagatggtgacggaaccgagattggagaacgcggtattaacctcagtggaggccagaaacaacgtgtgcaac |
206 |
Q |
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||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||| || | |||| |
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| T |
14302727 |
tgccttgaaaaggatcttgtaatgatggaagatggtgacgaaaccgagattggagagcgcggtattaacctcagtggcggccagaaacagcgcatacaac |
14302628 |
T |
|
| Q |
207 |
tagctagagctgtgtatcaggacactgacatttatctccttgatgatatattcagtgctgttgatgctcaaacaggatcgtttatttttaaagtaagaac |
306 |
Q |
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| ||||||||||| |||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||| || |
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| T |
14302627 |
ttgctagagctgtatatcaggacagtgacatctatctccttgatgatgtattcagtgctgttgatgctcaaacaggatcatttatttttaaggtaagcac |
14302528 |
T |
|
| Q |
307 |
aaag |
310 |
Q |
| |
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|||| |
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| T |
14302527 |
aaag |
14302524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 7 - 316
Target Start/End: Complemental strand, 14281443 - 14281134
Alignment:
| Q |
7 |
agcacaaacatcatggattcagaatgtaaccatcaaagaaaacatattgttcggtttaccaatgaacttggacaagtacagggaagctttaagggtgtgc |
106 |
Q |
| |
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|||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||| ||||||| ||||||||||| |||||| |
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| T |
14281443 |
agcacagacatcatggattcagaatgcaaccatcaaagaaaacatattgtttggtttaccaatgaacatggaaaagtacaaagaagctttaagagtgtgc |
14281344 |
T |
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| Q |
107 |
tgccttgaaaaggatcttgaaatgatggaagatggtgacggaaccgagattggagaacgcggtattaacctcagtggaggccagaaacaacgtgtgcaac |
206 |
Q |
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|||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||| ||||||||||||||||| ||||||||||||||||| | |||| |
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| T |
14281343 |
tgccttgaaaaggatcttgaaatgatggaatatggtgacgaaactgagattggagagcgcggtattaacctcagcggaggccagaaacaacgcatacaac |
14281244 |
T |
|
| Q |
207 |
tagctagagctgtgtatcaggacactgacatttatctccttgatgatatattcagtgctgttgatgctcaaacaggatcgtttatttttaaagtaagaac |
306 |
Q |
| |
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| ||||||||||| ||||| |||| |||||| ||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||| | ||| || |
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| T |
14281243 |
ttgctagagctgtatatcaagacagtgacatctatctccttgatgatgtattcagtgccgttgatgctcaaacaggatcatttatttttaaggcaagcac |
14281144 |
T |
|
| Q |
307 |
aaagataaaa |
316 |
Q |
| |
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|||| ||||| |
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| T |
14281143 |
aaagttaaaa |
14281134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 406 - 480
Target Start/End: Complemental strand, 14318798 - 14318724
Alignment:
| Q |
406 |
atctttttgcaggaatgtatcatgggagctctgaaagataagacggttttacttgtaacacaccaagttgatttc |
480 |
Q |
| |
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||||| || ||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||| |
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|
| T |
14318798 |
atcttgttacaggaatgtatcatgggagctctcaaagataagactgttttacttgtaacccaccaagttgatttc |
14318724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 412 - 480
Target Start/End: Complemental strand, 14302365 - 14302297
Alignment:
| Q |
412 |
ttgcaggaatgtatcatgggagctctgaaagataagacggttttacttgtaacacaccaagttgatttc |
480 |
Q |
| |
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||||||||||||||||||||| |||| ||||||||| | |||||||||||||||||||||||||||||| |
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| T |
14302365 |
ttgcaggaatgtatcatgggaactctcaaagataaggcagttttacttgtaacacaccaagttgatttc |
14302297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 412 - 480
Target Start/End: Complemental strand, 14280968 - 14280900
Alignment:
| Q |
412 |
ttgcaggaatgtatcatgggagctctgaaagataagacggttttacttgtaacacaccaagttgatttc |
480 |
Q |
| |
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||||||||||||||||||||| |||| |||||||| || ||||||||||||||||| |||||||||||| |
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| T |
14280968 |
ttgcaggaatgtatcatgggaactcttaaagataaaactgttttacttgtaacacatcaagttgatttc |
14280900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 152 - 276
Target Start/End: Complemental strand, 39664921 - 39664797
Alignment:
| Q |
152 |
gagattggagaacgcggtattaacctcagtggaggccagaaacaacgtgtgcaactagctagagctgtgtatcaggacactgacatttatctccttgatg |
251 |
Q |
| |
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||||||||||| || || || ||||| ||||| || ||||| || ||| | ||||| || ||||||| || || ||| |||||| ||||| ||||||| |
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| T |
39664921 |
gagattggagagcgtggcataaaccttagtggcggtcagaagcagcgtattcaacttgcacgagctgtataccaagactgtgacatatatcttcttgatg |
39664822 |
T |
|
| Q |
252 |
atatattcagtgctgttgatgctca |
276 |
Q |
| |
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|| |||||||||| ||||||||||| |
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| T |
39664821 |
atgtattcagtgcagttgatgctca |
39664797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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