View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4713_high_1 (Length: 476)
Name: NF4713_high_1
Description: NF4713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4713_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 400; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 16 - 447
Target Start/End: Complemental strand, 2606665 - 2606234
Alignment:
| Q |
16 |
acctgtgaaatctttctccaccaactcatttagctgcaagtcgtttgttgtgactaatgagactttgaacattctcaagaggctccataatcatttagtg |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2606665 |
acctgtgaaatctttctccaccaactcatttagctgcaagtcgtttgttgtgactaatgagactttgaacattctcaagaggctccataatcatttagtg |
2606566 |
T |
|
| Q |
116 |
ttatgttaatattaaaaatttagtatcgtatgtcgataacgtattaaaatatattcaacatagtgttcagcttaactcaaagctctattgggttttctat |
215 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2606565 |
ttatgttaatattacaaatttagtatcgtatgtcgataacgtattaaaatatattcaacatagtgtccagcttaactcaaagctctattgggttttctat |
2606466 |
T |
|
| Q |
216 |
ctgatttctcttttttgctgaggtaagctatgagtttacaactccatagaggttttattgcagtttctttagatctttattgcgtgtataagcacccctt |
315 |
Q |
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||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2606465 |
ctgatctctcttttttgctgaggtaatctatgagtttacaactccatagaggttttattgcagtttctttagatctttattgcgtgtataagcacccctt |
2606366 |
T |
|
| Q |
316 |
ctcgtgacggccctaaggttaatagataaattgatgagaaggcataataggttcttaagctttgaccctcaagtaagaatggatgctggaatgtaggaaa |
415 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2606365 |
ctcgtgatggccctaaggttaatagataaattgatgagaaggcataataggttcttaagctttgaccctcaagtaagaatggatgctggaatgtaggaaa |
2606266 |
T |
|
| Q |
416 |
ctgaagtataatgcttaagtgatcatacttag |
447 |
Q |
| |
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|||||||||| || ||||||||||||||||| |
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| T |
2606265 |
gtgaagtataacgcgtaagtgatcatacttag |
2606234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 111 - 425
Target Start/End: Complemental strand, 2600186 - 2599877
Alignment:
| Q |
111 |
tagtgttatgttaatattaaaaatttagtatcgtatgtcgataacgtattaaaatatattcaacatagtgttcagcttaactcaaagctctattgggttt |
210 |
Q |
| |
|
||||||||| |||||| || ||||||||| ||||||||||||| |||||||||||||||||||||||| | || |||||||||||||||| ||||| | |
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| T |
2600186 |
tagtgttattttaataatactaatttagtaccgtatgtcgataatgtattaaaatatattcaacatagtatccaacttaactcaaagctct--tgggtct |
2600089 |
T |
|
| Q |
211 |
tctatctgatttctcttttttgctgaggtaagctatgagtttacaactccatagaggttttattgcagtttctttagatctttattgcgtgtataagcac |
310 |
Q |
| |
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||||||||| || |||||| || |||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||| |
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|
| T |
2600088 |
tctatctgacttatcttttatgttgaggtaaactatgagtttacaactccatagaggttttattgcagttgctatagatctttattgcctgtataagcac |
2599989 |
T |
|
| Q |
311 |
cccttctcgtgacggccctaaggttaatagataaattgatgagaaggcataataggttcttaagctttgaccctcaagtaagaatggatgctggaatgta |
410 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
2599988 |
ccct---cgtgacggccctaaggttaatagataaattgatgagaaggcataataggttcttaagctttgaccctcaagtaagaattgatgctggaatgta |
2599892 |
T |
|
| Q |
411 |
ggaaactgaagtata |
425 |
Q |
| |
|
| ||| ||| ||||| |
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|
| T |
2599891 |
gaaaagtgatgtata |
2599877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 10294173 - 10294224
Alignment:
| Q |
16 |
acctgtgaaatctttctccaccaactcatttagctgcaagtcgtttgttgtg |
67 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||| | |||| ||||||||| |
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|
| T |
10294173 |
acctgtgaaatctttccccgccaactcatttagctccgagtcatttgttgtg |
10294224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 98
Target Start/End: Original strand, 10294304 - 10294333
Alignment:
| Q |
69 |
ctaatgagactttgaacattctcaagaggc |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
10294304 |
ctaatgagactttgaacattctcaagaggc |
10294333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 70 - 98
Target Start/End: Original strand, 2581038 - 2581066
Alignment:
| Q |
70 |
taatgagactttgaacattctcaagaggc |
98 |
Q |
| |
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||||||||||||||||||||||||||||| |
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|
| T |
2581038 |
taatgagactttgaacattctcaagaggc |
2581066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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