View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4713_high_2 (Length: 380)
Name: NF4713_high_2
Description: NF4713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4713_high_2 |
 | |
|
| [»] chr4 (3 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 12 - 380
Target Start/End: Original strand, 1869655 - 1870023
Alignment:
| Q |
12 |
tattctgagcaagatacccttttgtttctcacaatggactatgacaagtacatcnnnnnnngacactcttgctttgatctctggaagagtattatcactt |
111 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
1869655 |
tattttgagcaagatacccttttgtttctcacaatggactatgacaagtacatctttttttgacactcttgctttgatctctggaagagtattatcacct |
1869754 |
T |
|
| Q |
112 |
gttccacaattgtactcatctgaattcactttggtccttttgttgctacaaatgtttgatccagcttcttgttctagctctctcacacgttctgcaagtt |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1869755 |
gttccacaattgtactcatctgaattcactttggtccttttgttgctacaaatgtttgatccagcttcttgttctagctctctcacacgttctgcaagtt |
1869854 |
T |
|
| Q |
212 |
tttccacatagtctctagctttgtccacgattgaagtgtcgtcgtccatctacaagttcatatagaaaaattaatttcaagattttaatggagaaaaatt |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1869855 |
tttccacatagtctctagctttgtccacgattgaagtgtcgtcgtccatctacaagttcatatagaaaaattaatttcaagattttaatagagaaaaatt |
1869954 |
T |
|
| Q |
312 |
aatttcaagtttttaatagctatgtgtgtgtatgagtagtcatcataagtttgactctagagtaaaact |
380 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
1869955 |
aatttcaagtttttaatagctatgtgtgtgtacgagtagtcatcataagtttgactctagagtaaaact |
1870023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 132 - 232
Target Start/End: Original strand, 1916916 - 1917016
Alignment:
| Q |
132 |
tgaattcactttggtccttttgttgctacaaatgtttgatccagcttcttgttctagctctctcacacgttctgcaagtttttccacatagtctctagct |
231 |
Q |
| |
|
|||| ||| ||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||| |||| || | | ||||||||||||| |
|
|
| T |
1916916 |
tgaactcagtttggtccttttgttagtacaaatgttggatccagcttcttcttctagctctctcacacgttcttgaagtgttgctaaatagtctctagct |
1917015 |
T |
|
| Q |
232 |
t |
232 |
Q |
| |
|
| |
|
|
| T |
1917016 |
t |
1917016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 12 - 102
Target Start/End: Original strand, 1916820 - 1916910
Alignment:
| Q |
12 |
tattctgagcaagatacccttttgtttctcacaatggactatgacaagtacatcnnnnnnngacactcttgctttgatctctggaagagta |
102 |
Q |
| |
|
|||| |||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||| |
|
|
| T |
1916820 |
tattttgagcagaataccattttgtttctcacaatggactatgacaagtacatctttttgtaacacttttgctttgacctctggaagagta |
1916910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 138; Significance: 5e-72; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 12 - 230
Target Start/End: Original strand, 17488502 - 17488720
Alignment:
| Q |
12 |
tattctgagcaagatacccttttgtttctcacaatggactatgacaagtacatcnnnnnnngacactcttgctttgatctctggaagagtattatcactt |
111 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
17488502 |
tattttgagcaagataccattttgtttctcacaatggactatgacaagtacatcattttgtaacacttttgctttgacctctggaagagtattatcactt |
17488601 |
T |
|
| Q |
112 |
gttccacaattgtactcatctgaattcactttggtccttttgttgctacaaatgtttgatccagcttcttgttctagctctctcacacgttctgcaagtt |
211 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
17488602 |
gttccacaactgtactcatctgaattcactttggtccttttgtttgtacaaatgttggatccatcttcttgttctagctctctcacacgttcttgaagtg |
17488701 |
T |
|
| Q |
212 |
tttccacatagtctctagc |
230 |
Q |
| |
|
|| | |||||||||||||| |
|
|
| T |
17488702 |
ttgctacatagtctctagc |
17488720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 12 - 230
Target Start/End: Complemental strand, 17564712 - 17564494
Alignment:
| Q |
12 |
tattctgagcaagatacccttttgtttctcacaatggactatgacaagtacatcnnnnnnngacactcttgctttgatctctggaagagtattatcactt |
111 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
17564712 |
tattttgagcaagataccattttgtttctcacaatggactatgacaagtacatcattttgtaacacttttgctttgacctctggaagagtattatcactt |
17564613 |
T |
|
| Q |
112 |
gttccacaattgtactcatctgaattcactttggtccttttgttgctacaaatgtttgatccagcttcttgttctagctctctcacacgttctgcaagtt |
211 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
17564612 |
gttccacaactgtactcatctgaattcactttggtccttttgtttgtacaaatgttggatccatcttcttgttctagctctctcacacgttcttgaagtg |
17564513 |
T |
|
| Q |
212 |
tttccacatagtctctagc |
230 |
Q |
| |
|
|| | |||||||||||||| |
|
|
| T |
17564512 |
ttgctacatagtctctagc |
17564494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University