View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4713_high_8 (Length: 311)
Name: NF4713_high_8
Description: NF4713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4713_high_8 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 35327345 - 35327023
Alignment:
| Q |
1 |
caccaccacattcactcaccaacccctgctcctactcct------------tctcctattcacacccctctacaccctccttaccattctgctcctgtac |
88 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35327345 |
caccaccacattcactcaccaacccctgctcctactcctactccttctccttctcctattcacacccctctacaccctccttaccattctgctcctgtac |
35327246 |
T |
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| Q |
89 |
ctgctaaaccaccaactcacggccaccaccaccatcatcctcaccctcctgctcctgcacctgtccacacacctgttgctccagcacatccaccactaca |
188 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35327245 |
ctgctaaaccaccaactcacggccaccaccaccatcatcctcaccctcctgctcctacacctgtccacacacctgttgctccagcacatccaccactaca |
35327146 |
T |
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| Q |
189 |
cccacctgttcacacccctgttgttccaactcaccctccattacacccacctgctccagcacacccaccattgcatcctactcccctccctagaagcttt |
288 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35327145 |
cccacccgttcacacccctgttgttccaactcaccctccattacacccacctgctccagcacacccaccattgcatcctactcccctccctagaagcttt |
35327046 |
T |
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| Q |
289 |
atagctgttcaaggtgttgttta |
311 |
Q |
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||||||||||||||||||||||| |
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| T |
35327045 |
atagctgttcaaggtgttgttta |
35327023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 311
Target Start/End: Complemental strand, 35335121 - 35335087
Alignment:
| Q |
277 |
cctagaagctttatagctgttcaaggtgttgttta |
311 |
Q |
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| T |
35335121 |
cctagaagcttaatagctgttcaaggtgttgttta |
35335087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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