View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4714-Insertion-1 (Length: 760)

Name: NF4714-Insertion-1
Description: NF4714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4714-Insertion-1
NF4714-Insertion-1
[»] chr1 (9 HSPs)
chr1 (8-621)||(4794615-4795238)
chr1 (8-159)||(4793403-4793554)
chr1 (204-393)||(4796355-4796543)
chr1 (467-621)||(4795680-4795844)
chr1 (618-722)||(4793698-4793802)
chr1 (618-722)||(4795382-4795486)
chr1 (411-461)||(4796272-4796322)
chr1 (278-329)||(4795542-4795593)
chr1 (264-329)||(4793859-4793924)
[»] chr2 (2 HSPs)
chr2 (247-305)||(9956968-9957026)
chr2 (277-310)||(17298889-17298922)
[»] chr4 (1 HSPs)
chr4 (247-303)||(540800-540856)
[»] chr5 (2 HSPs)
chr5 (259-299)||(27718968-27719008)
chr5 (271-304)||(40656481-40656514)
[»] chr7 (1 HSPs)
chr7 (268-305)||(46179908-46179945)


Alignment Details
Target: chr1 (Bit Score: 448; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 8 - 621
Target Start/End: Complemental strand, 4795238 - 4794615
Alignment:
Q  8 tcataccgtatattagtgtctcacattaaattctaaataacttagtaatgtgtgatttaggctgcataagtggatcatacgatgttatcatggattctca 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  4795238 tcataccgtatattagtgtctcacattaaattctaaataacttagtaatgtgtgatttaggctccataagtggatcatacgatgttatcatggattctca 4795139  T
Q  108 caccataatattttcttgtctgttatatattcatcaatttccttgataatatgacaatactctttaaaagaatnnnnnnnnnnnnttagaacatcttcta 207  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||            |||||| ||||||||    
T  4795138 caccataatattttcttgtctgttatatattcatcaatttccttaataatatgacaatattctttaaaagaataaaaaataaaaattagaatatcttcta 4795039  T
Q  208 tccataatctatgaagcgcgaaatagaaagatgtcagctggtgtctgatatgtgtcggtgtccgacacggacacatgtgattatgttcaattaatttact 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  4795038 tccataatctatgaagcgcgaaatagaaagatgtcagctggtgtctgatatgtgtcggtgtccgacacggacacatgtaattatgttcaattaacttact 4794939  T
Q  308 ttttaaaattttaagaagtgtcaatgtgttccgtcatgacccaaacccaataatacttaaaatgtcctaatattgagtttcactttannnnnnnaaaatg 407  Q
    |||| | |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||       ||||||    
T  4794938 ttttcagattttaggaagtgtcgatgtgttccgtcatgacccaaacccaataatacttaaaatgttctaatattgagtttcactttatttttttaaaatg 4794839  T
Q  408 acaattgttatagtaattttttcactcatgacctccaacatcttttcttttagctagggcacccaccattgagtttctcatattatgcaaaaacat---- 503  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  4794838 ataattgttatagtaattttttcactcatgacctccaacatcttttcttttagctagggcacccaccattgagtttctcatattatgcaaaaacatttaa 4794739  T
Q  504 ------tcaaagaaaacaaaagaataagctaagttagtttgaattaccaaactaatagtgacagctgtcagaaatcctaattaactacacctgtcataat 597  Q
          |||| |||||||||||||||| ||||||||||||||||||||||| ||| || |||| |||||||||||||||||||||||| ||||||||||     
T  4794738 agaaaatcaatgaaaacaaaagaataaactaagttagtttgaattaccaaattaacagcgacaactgtcagaaatcctaattaactacccctgtcataac 4794639  T
Q  598 taatttagttacactcaaataaga 621  Q
    ||| ||||||||||||||||||||    
T  4794638 taagttagttacactcaaataaga 4794615  T

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Target: chr1; HSP #2
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 8 - 159
Target Start/End: Complemental strand, 4793554 - 4793403
Alignment:
Q  8 tcataccgtatattagtgtctcacattaaattctaaataacttagtaatgtgtgatttaggctgcataagtggatcatacgatgttatcatggattctca 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4793554 tcataccgtatattagtgtctcacattaaattctaaataacttagtaatgtgtgatttaggctgcataagtggatcatacgatgttatcatggattctca 4793455  T
Q  108 caccataatattttcttgtctgttatatattcatcaatttccttgataatat 159  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  4793454 caccataatattttcttgtctgttatatgttcatcaatttccttgataatat 4793403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 204 - 393
Target Start/End: Complemental strand, 4796543 - 4796355
Alignment:
Q  204 tctatccataatctatgaagcgcgaaatagaaagatgtcagctggtgtctgatatgtgtcggtgtccgacacggacacatgtgattatgttcaattaatt 303  Q
    |||| ||| |||||||||||| |||||||||| |||||||    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  4796543 tctacccacaatctatgaagcacgaaatagaaggatgtcac---gtgtctgatatgtgtcggtgtccgacactgacacatgtgattatgttcaattaatt 4796447  T
Q  304 tactttttaaaattttaagaagtgtcaatgtgttccgtcatgacccaaacccaataatacttaaa--atgtcctaatattgagtttcacttt 393  Q
    || ||||| |||||||| |||||||| | |||||||||||||||||||| |||||||||||||||  ||||| |||||||||||||||||||    
T  4796446 tattttttcaaattttaggaagtgtcgacgtgttccgtcatgacccaaatccaataatacttaaaagatgtcataatattgagtttcacttt 4796355  T

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Target: chr1; HSP #4
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 467 - 621
Target Start/End: Complemental strand, 4795844 - 4795680
Alignment:
Q  467 cacccaccattgagtttctcatattatgcaaaaacattcaaagaaaa----------caaaagaataagctaagttagtttgaattaccaaactaatagt 556  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||| |||||||    
T  4795844 cacccaccattgagtttctcgtattatgcaaaaacattcaaagaaaatcaatgaaaacaaaagaataagctaagttagtttgaattaccaaattaatagt 4795745  T
Q  557 gacagctgtcagaaatcctaattaactacacctgtcataattaatttagttacactcaaataaga 621  Q
    ||||||||||||||||||||| |||||||||||||||||| ||| ||| ||||||||||||||||    
T  4795744 gacagctgtcagaaatcctaactaactacacctgtcataactaacttaattacactcaaataaga 4795680  T

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Target: chr1; HSP #5
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 618 - 722
Target Start/End: Complemental strand, 4793802 - 4793698
Alignment:
Q  618 aagattgtttcttgacttttttcttcattttctttatccatatagggactgggagatattcttcccttcactttgtctcactctttttccccttgtgact 717  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  |||||||    
T  4793802 aagattgtttcttgacttttttcttcattttctttatccatatagggactgggagatattcttcccttcactttctctcactctttttccctatgtgact 4793703  T
Q  718 gtgac 722  Q
    |||||    
T  4793702 gtgac 4793698  T

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Target: chr1; HSP #6
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 618 - 722
Target Start/End: Complemental strand, 4795486 - 4795382
Alignment:
Q  618 aagattgtttcttgacttttttcttcattttctttatccatatagggactgggagatattcttcccttcactttgtctcactctttttccccttgtgact 717  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||  ||||||     
T  4795486 aagattgtttcttgacttttttcttcattttctttatccatatagggactgagagatattcttcccatcactttctctcactctttttccctctgtgacc 4795387  T
Q  718 gtgac 722  Q
    |||||    
T  4795386 gtgac 4795382  T

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Target: chr1; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 411 - 461
Target Start/End: Complemental strand, 4796322 - 4796272
Alignment:
Q  411 attgttatagtaattttttcactcatgacctccaacatcttttcttttagc 461  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  4796322 attgttatagtaattttttcactcatgacctccaacatcttttctcttagc 4796272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 278 - 329
Target Start/End: Complemental strand, 4795593 - 4795542
Alignment:
Q  278 acacatgtgattatgttcaattaatttactttttaaaattttaagaagtgtc 329  Q
    |||||||||||||||||||||||||||| ||||| ||||||||  |||||||    
T  4795593 acacatgtgattatgttcaattaatttattttttcaaattttagaaagtgtc 4795542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 264 - 329
Target Start/End: Complemental strand, 4793924 - 4793859
Alignment:
Q  264 ggtgtccgacacggacacatgtgattatgttcaattaatttactttttaaaattttaagaagtgtc 329  Q
    ||||||||| ||  ||||||||||||||||| |||||||| | ||||| |||||||| ||||||||    
T  4793924 ggtgtccgatactaacacatgtgattatgtttaattaattaattttttcaaattttaggaagtgtc 4793859  T

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Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 247 - 305
Target Start/End: Original strand, 9956968 - 9957026
Alignment:
Q  247 ggtgtctgatatgtgtcggtgtccgacacggacacatgtgattatgttcaattaattta 305  Q
    ||||||||| ||||||||||||||| ||||||||||||| |||| |||||| |||||||    
T  9956968 ggtgtctgacatgtgtcggtgtccggcacggacacatgtcattacgttcaaataattta 9957026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 277 - 310
Target Start/End: Original strand, 17298889 - 17298922
Alignment:
Q  277 gacacatgtgattatgttcaattaatttactttt 310  Q
    ||||||||||||||||||||||||||||| ||||    
T  17298889 gacacatgtgattatgttcaattaatttattttt 17298922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 247 - 303
Target Start/End: Original strand, 540800 - 540856
Alignment:
Q  247 ggtgtctgatatgtgtcggtgtccgacacggacacatgtgattatgttcaattaatt 303  Q
    ||||||||| |||||||  |||||||||  |||||||||||||||||||||||||||    
T  540800 ggtgtctgacatgtgtccatgtccgacatcgacacatgtgattatgttcaattaatt 540856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 259 - 299
Target Start/End: Original strand, 27718968 - 27719008
Alignment:
Q  259 gtgtcggtgtccgacacggacacatgtgattatgttcaatt 299  Q
    ||||| ||||||||||| |||||||||||||||||||||||    
T  27718968 gtgtcagtgtccgacaccgacacatgtgattatgttcaatt 27719008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 271 - 304
Target Start/End: Complemental strand, 40656514 - 40656481
Alignment:
Q  271 gacacggacacatgtgattatgttcaattaattt 304  Q
    ||||| ||||||||||||||||||||||||||||    
T  40656514 gacaccgacacatgtgattatgttcaattaattt 40656481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 268 - 305
Target Start/End: Original strand, 46179908 - 46179945
Alignment:
Q  268 tccgacacggacacatgtgattatgttcaattaattta 305  Q
    |||||||| ||||||||||||||| |||||||||||||    
T  46179908 tccgacaccgacacatgtgattatattcaattaattta 46179945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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