View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4714-Insertion-3 (Length: 603)
Name: NF4714-Insertion-3
Description: NF4714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4714-Insertion-3 |
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Alignment Details
Target: chr4 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 216 - 576
Target Start/End: Complemental strand, 46503865 - 46503505
Alignment:
| Q |
216 |
gctccataattgtgcacttgtcatccaatttgccatatcacatacattattatttgttgtcttttccaatgtttctgatgatgttaattgcttcactggt |
315 |
Q |
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| T |
46503865 |
gctccataattgtgcacttgtcatccaatttgccatatcacatacattattatttgttgtcttttccaatgtttctgatgatgttaattgcttcactggt |
46503766 |
T |
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| Q |
316 |
atgaactcttctagaattggttttgctccttgattcgatctaaacgcttgaagttgctgcttcgatgcttccatcgctgaaaattgtgcacgagaaaaat |
415 |
Q |
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| T |
46503765 |
atgaactcttctagaattggttttgctccttgattcgatctaaacgcttgaagttgctgcttcgatgcttccattgctgaaaattgtgcacgagaaaaat |
46503666 |
T |
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| Q |
416 |
tattaattaaagtgacactaacgacaattttacaaatatgtcaaataagatttgaactcggtctcttgagacctcggacaaataattaaatagtttgtta |
515 |
Q |
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| T |
46503665 |
tattaattaaagtgacactaacgacaattttacaaatatgtcaaataagatttgaactcggtctcttgagacctcggacaaataattaaatagtttgtta |
46503566 |
T |
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| Q |
516 |
catataaaagaaagaaaaggtggtttgaaagtgtaccgtttgtgagaagttgcatccagag |
576 |
Q |
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| T |
46503565 |
catataaaagaaagaaaaggtggtttgaaagtgtaccgtttgtgagaagttgcatgcagag |
46503505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 8 - 146
Target Start/End: Complemental strand, 46504073 - 46503935
Alignment:
| Q |
8 |
tcttatcctcttctttttgagtagaagctagtgctagttcaggaagaccctgaccttgacaagatgagttatttctttcttttgagaatgggagaaaagc |
107 |
Q |
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| T |
46504073 |
tcttatcctcttctttttgagtagaagctagtgctagttcaggaagaccctgaccttgacaagatgagttatttctttcttttgagaatgggagaaaagc |
46503974 |
T |
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| Q |
108 |
tccaccatttctatgtttaggactaatgttaaatccaat |
146 |
Q |
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| T |
46503973 |
tccaccatttctatgtttaggactaatgttaaatccaat |
46503935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 413 - 450
Target Start/End: Original strand, 1082590 - 1082627
Alignment:
| Q |
413 |
aattattaattaaagtgacactaacgacaattttacaa |
450 |
Q |
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| T |
1082590 |
aattattaattaaagtgacattaacgacaattttacaa |
1082627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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