View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4714-Insertion-5 (Length: 368)
Name: NF4714-Insertion-5
Description: NF4714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4714-Insertion-5 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 7 - 368
Target Start/End: Complemental strand, 46963453 - 46963107
Alignment:
| Q |
7 |
agattgtttgtttgccacgtgtgtgttcatgagttccatttggtgtgcaatgtttaaatggttggggattacatatgtgtg--ccgggaannnnnnnngt |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||| || |
|
|
| T |
46963453 |
agattgtttgtttgccacgtgtgtgttcatgagttccatttggtgtg-----------------gggagtacatatgtgtgtgccgggaattttttttgt |
46963371 |
T |
|
| Q |
105 |
cttgcttcaattgtgttacctccttggttaggaaagacgta---tgtaagtaggatattgttgatttggcgtacggtgctttgcctcgtttgaaaagcta |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46963370 |
cttgcttcaattgtgttacctccttggttaggaaagacgtactatgtaagtaggatattgttgatttggcgtacggtgctttgcctcgtttgaaaagcta |
46963271 |
T |
|
| Q |
202 |
gaaaggatctcatttccaaggtaaacgttcctaaagtggtagaagtagttgatttgatcaagagactttcttgagaatgactcttggattatataagtcg |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
46963270 |
gaaaggatctcatttccaaggtaaacgttcctaaagtggtagaagtagttgatttgatcaagagactttcttgagaatgactcttgg---atataagtcg |
46963174 |
T |
|
| Q |
302 |
atgtcttctttcnnnnnnnatgaatggtttatgttgccactaaattgtaagtttcctactagtacta |
368 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
46963173 |
atgtcttctttctttttttatgaatggtttatgttgccactaaattgtaagtttcccactagtacta |
46963107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 17 - 86
Target Start/End: Complemental strand, 46967385 - 46967316
Alignment:
| Q |
17 |
tttgccacgtgtgtgttcatgagttccatttggtgtgcaatgtttaaatggttggggattacatatgtgt |
86 |
Q |
| |
|
||||||| ||||||||||| ||||||||||| || || |||||||||||||||||||||||||||||| |
|
|
| T |
46967385 |
tttgccaagtgtgtgttcacgagttccatttagtatgtggtgtttaaatggttggggattacatatgtgt |
46967316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University