View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4714_high_5 (Length: 353)
Name: NF4714_high_5
Description: NF4714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4714_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 42076516 - 42076872
Alignment:
| Q |
1 |
acaaagtgccatgcaaaacaagaaggtgacacgttatatatggtggattgtggagtgagtgcaaggaagtattgtgtatacgcgtgtatattatgtatat |
100 |
Q |
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| T |
42076516 |
acaaagtgccatgcaaaacaagaaggtgacacgttatatatggtggattgtggagtgagcgcaaggaagtattgtgtatacgcgtgtatattatgtatgt |
42076615 |
T |
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| Q |
101 |
gtgattgatactgtgaacctacctagtaatcttttgtatgatatttta------ttttatggttgatgtcgtttagtacaagttttctttgcttcttatt |
194 |
Q |
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| T |
42076616 |
gtgattgatactgtgaacctacctagtaatcttttgtatgatattttaattttattttatggttgatgtcgtttagtacaagttttctttgcttcttatt |
42076715 |
T |
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| Q |
195 |
attat---ggtgttttgtttctagtttcttcttttct--cttaattggaaaatattcgatgaacctgaatgagacctttgttgtatagaatagaactctg |
289 |
Q |
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| T |
42076716 |
attattatggtgttttgtttctagtttcttcttttctttcttaattggaaaatattcgatgaacctgaatgagacctttgttggatagaatagaactctg |
42076815 |
T |
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| Q |
290 |
ttgctgccgtatgttggtttaatacataaaattccacagctacctttacctttgctt |
346 |
Q |
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| T |
42076816 |
ttgctgccgtatgttggtttaatacataaaattccacagctacctttacctttgctt |
42076872 |
T |
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