View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4714_low_1 (Length: 445)
Name: NF4714_low_1
Description: NF4714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4714_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 72 - 363
Target Start/End: Original strand, 18332192 - 18332483
Alignment:
| Q |
72 |
cagtggtgttgataaaataaaacaaagtactatacccaataccaacacaatgagaaacttagctactcgaatccactagaattgatgctccaccttcttc |
171 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18332192 |
cagtggtgttgataaaataaaacaaactactatacccaataccaacacaatgagaaacttagctactcgaatccactagaattgatgctccaccttcttc |
18332291 |
T |
|
| Q |
172 |
ctaagttctcctatgtctcactcagtttgtctatgcttggggagtggtagaatgctgaaaatggtgaagtgaagctctatttatagagttttcaaaaatg |
271 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18332292 |
ctaagttctcctatgtctcactctgtttgtctatgcttggagagtggtagaatgttgaaaatggtgaagtgaagctctatttatagagttttcaaaaatg |
18332391 |
T |
|
| Q |
272 |
ggatttcgcttaacgaattgatactagttgagcaaattgatatttcttcatctgtgggtttcttccagctcaacactgagtccttgtataac |
363 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18332392 |
ggatttcacttaacgaattgatactagttgagcaaattgatatttcttcacctgtgggtttcttccagctcaacactgagtccttgtataac |
18332483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University