View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4714_low_11 (Length: 201)

Name: NF4714_low_11
Description: NF4714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4714_low_11
NF4714_low_11
[»] chr3 (3 HSPs)
chr3 (20-69)||(34800086-34800135)
chr3 (26-69)||(36438565-36438608)
chr3 (24-67)||(53613125-53613168)
[»] chr1 (5 HSPs)
chr1 (112-157)||(42098429-42098474)
chr1 (21-68)||(48030023-48030070)
chr1 (20-69)||(42098515-42098564)
chr1 (24-65)||(15233875-15233916)
chr1 (25-66)||(17241888-17241929)
[»] chr2 (6 HSPs)
chr2 (24-66)||(18751255-18751297)
chr2 (20-60)||(18775303-18775343)
chr2 (24-67)||(18615749-18615792)
chr2 (24-67)||(29220716-29220759)
chr2 (24-67)||(29334015-29334058)
chr2 (23-69)||(41660914-41660959)
[»] chr8 (2 HSPs)
chr8 (20-68)||(44038806-44038854)
chr8 (24-68)||(13116572-13116616)
[»] chr5 (3 HSPs)
chr5 (20-68)||(7492834-7492882)
chr5 (23-64)||(6376820-6376861)
chr5 (22-59)||(39949274-39949311)
[»] chr6 (2 HSPs)
chr6 (22-69)||(26545652-26545699)
chr6 (20-64)||(21383610-21383654)
[»] chr7 (3 HSPs)
chr7 (20-64)||(21262201-21262245)
chr7 (24-67)||(13563076-13563119)
chr7 (25-66)||(5737403-5737444)
[»] chr4 (2 HSPs)
chr4 (20-64)||(1996847-1996891)
chr4 (26-69)||(16313993-16314036)


Alignment Details
Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 34800086 - 34800135
Alignment:
Q  20 acaaaaaataatactaaagatttgaaatacctaaactacccctaatgctt 69  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  34800086 acaaaaaataatactaaagatgtgaaatacctaaactacccctaatgctt 34800135  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 26 - 69
Target Start/End: Complemental strand, 36438608 - 36438565
Alignment:
Q  26 aataatactaaagatttgaaatacctaaactacccctaatgctt 69  Q
    ||||||||||||||| ||||||||||||| |||||||| |||||    
T  36438608 aataatactaaagatgtgaaatacctaaagtacccctactgctt 36438565  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 24 - 67
Target Start/End: Original strand, 53613125 - 53613168
Alignment:
Q  24 aaaataatactaaagatttgaaatacctaaactacccctaatgc 67  Q
    |||||||||| |||||| ||||||||||||| ||||||||||||    
T  53613125 aaaataatacaaaagatatgaaatacctaaaatacccctaatgc 53613168  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 112 - 157
Target Start/End: Complemental strand, 42098474 - 42098429
Alignment:
Q  112 ttaagttccataatatattttgttcttctccagcggaatcttcttc 157  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  42098474 ttaagttccataatttattttgttcttctccagcggaatcttcttc 42098429  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 48030070 - 48030023
Alignment:
Q  21 caaaaaataatactaaagatttgaaatacctaaactacccctaatgct 68  Q
    |||||||||||||||||||| ||||||||||||| ||||||| |||||    
T  48030070 caaaaaataatactaaagatgtgaaatacctaaaatacccctgatgct 48030023  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 42098564 - 42098515
Alignment:
Q  20 acaaaaaataatactaaagatttgaaatacctaaactacccctaatgctt 69  Q
    ||||||||||||||||||||| | ||||||||||| ||||| ||||||||    
T  42098564 acaaaaaataatactaaagatgtaaaatacctaaattacccttaatgctt 42098515  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 24 - 65
Target Start/End: Complemental strand, 15233916 - 15233875
Alignment:
Q  24 aaaataatactaaagatttgaaatacctaaactacccctaat 65  Q
    |||||||| |||||||| ||||||||||||| ||||||||||    
T  15233916 aaaataatgctaaagatgtgaaatacctaaaatacccctaat 15233875  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 17241929 - 17241888
Alignment:
Q  25 aaataatactaaagatttgaaatacctaaactacccctaatg 66  Q
    |||| ||||||||||| ||||||||||||| |||||||||||    
T  17241929 aaatgatactaaagatgtgaaatacctaaaatacccctaatg 17241888  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 24 - 66
Target Start/End: Complemental strand, 18751297 - 18751255
Alignment:
Q  24 aaaataatactaaagatttgaaatacctaaactacccctaatg 66  Q
    ||||||||||||||||||||||||||||||| |||||||||||    
T  18751297 aaaataatactaaagatttgaaatacctaaaatacccctaatg 18751255  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 18775343 - 18775303
Alignment:
Q  20 acaaaaaataatactaaagatttgaaatacctaaactaccc 60  Q
    ||||||||||||||||||||| ||||||||||||| |||||    
T  18775343 acaaaaaataatactaaagatgtgaaatacctaaagtaccc 18775303  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 24 - 67
Target Start/End: Original strand, 18615749 - 18615792
Alignment:
Q  24 aaaataatactaaagatttgaaatacctaaactacccctaatgc 67  Q
    ||||||||| ||||||| ||||||||||||| ||||||||||||    
T  18615749 aaaataatattaaagatgtgaaatacctaaaatacccctaatgc 18615792  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 24 - 67
Target Start/End: Complemental strand, 29220759 - 29220716
Alignment:
Q  24 aaaataatactaaagatttgaaatacctaaactacccctaatgc 67  Q
    ||||||||| ||||||| ||||||||||||| ||||||||||||    
T  29220759 aaaataatattaaagatgtgaaatacctaaaatacccctaatgc 29220716  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 24 - 67
Target Start/End: Complemental strand, 29334058 - 29334015
Alignment:
Q  24 aaaataatactaaagatttgaaatacctaaactacccctaatgc 67  Q
    ||||||||| ||||||| ||||||||||||| ||||||||||||    
T  29334058 aaaataatattaaagatgtgaaatacctaaaatacccctaatgc 29334015  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 69
Target Start/End: Complemental strand, 41660959 - 41660914
Alignment:
Q  23 aaaaataatactaaagatttgaaatacctaaactacccctaatgctt 69  Q
    ||||||||||| |||||| |||||||||||||||||| |||||||||    
T  41660959 aaaaataatac-aaagatgtgaaatacctaaactacctctaatgctt 41660914  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 44038854 - 44038806
Alignment:
Q  20 acaaaaaataatactaaagatttgaaatacctaaactacccctaatgct 68  Q
    |||||||||||||||||| || ||||||||||||| |||||||||||||    
T  44038854 acaaaaaataatactaaatatgtgaaatacctaaaatacccctaatgct 44038806  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 13116572 - 13116616
Alignment:
Q  24 aaaataatactaaagatttgaaatacctaaactacccctaatgct 68  Q
    |||||||| |||||||| ||||||||||||| || ||||||||||    
T  13116572 aaaataatgctaaagatgtgaaatacctaaaatatccctaatgct 13116616  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 7492882 - 7492834
Alignment:
Q  20 acaaaaaataatactaaagatttgaaatacctaaactacccctaatgct 68  Q
    |||| |||||||||||||||| ||||||||||||| |||||||||||||    
T  7492882 acaataaataatactaaagatgtgaaatacctaaagtacccctaatgct 7492834  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 6376861 - 6376820
Alignment:
Q  23 aaaaataatactaaagatttgaaatacctaaactacccctaa 64  Q
    ||||||||||||||||||| |||||||||||| |||||||||    
T  6376861 aaaaataatactaaagattcgaaatacctaaagtacccctaa 6376820  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 39949311 - 39949274
Alignment:
Q  22 aaaaaataatactaaagatttgaaatacctaaactacc 59  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  39949311 aaaaaataatactaaagatgtgaaatacctaaactacc 39949274  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 69
Target Start/End: Complemental strand, 26545699 - 26545652
Alignment:
Q  22 aaaaaataatactaaagatttgaaatacctaaactacccctaatgctt 69  Q
    ||||| ||||| ||||||| ||||||||||||||||||||||||||||    
T  26545699 aaaaattaatattaaagatgtgaaatacctaaactacccctaatgctt 26545652  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 21383654 - 21383610
Alignment:
Q  20 acaaaaaataatactaaagatttgaaatacctaaactacccctaa 64  Q
    |||||||||||||||||||||  |||||||||||| |||||||||    
T  21383654 acaaaaaataatactaaagatgcgaaatacctaaaatacccctaa 21383610  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 21262201 - 21262245
Alignment:
Q  20 acaaaaaataatactaaagatttgaaatacctaaactacccctaa 64  Q
    |||||||||||||||||||||  |||||||||||| |||||||||    
T  21262201 acaaaaaataatactaaagatgcgaaatacctaaaatacccctaa 21262245  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 24 - 67
Target Start/End: Original strand, 13563076 - 13563119
Alignment:
Q  24 aaaataatactaaagatttgaaatacctaaactacccctaatgc 67  Q
    |||||||||| |||||| ||||||||||||| ||||||||||||    
T  13563076 aaaataatacaaaagatatgaaatacctaaaatacccctaatgc 13563119  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 5737403 - 5737444
Alignment:
Q  25 aaataatactaaagatttgaaatacctaaactacccctaatg 66  Q
    |||| ||||||||||| ||||||||||||| |||||||||||    
T  5737403 aaatgatactaaagatgtgaaatacctaaaatacccctaatg 5737444  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 1996891 - 1996847
Alignment:
Q  20 acaaaaaataatactaaagatttgaaatacctaaactacccctaa 64  Q
    |||||||||||||||||||||  |||||||||||| |||||||||    
T  1996891 acaaaaaataatactaaagatgcgaaatacctaaaatacccctaa 1996847  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 26 - 69
Target Start/End: Complemental strand, 16314036 - 16313993
Alignment:
Q  26 aataatactaaagatttgaaatacctaaactacccctaatgctt 69  Q
    ||||||||||||||| ||||||||||||| |||||||| |||||    
T  16314036 aataatactaaagatgtgaaatacctaaagtacccctactgctt 16313993  T

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