View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4714_low_6 (Length: 327)

Name: NF4714_low_6
Description: NF4714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4714_low_6
NF4714_low_6
[»] chr6 (3 HSPs)
chr6 (15-309)||(26464099-26464382)
chr6 (32-96)||(13379112-13379176)
chr6 (98-128)||(680749-680779)
[»] chr1 (1 HSPs)
chr1 (20-309)||(31197835-31198103)
[»] scaffold0182 (1 HSPs)
scaffold0182 (32-96)||(32489-32553)
[»] chr7 (2 HSPs)
chr7 (32-96)||(21723853-21723917)
chr7 (198-286)||(37912411-37912499)
[»] chr8 (3 HSPs)
chr8 (98-128)||(20385946-20385976)
chr8 (98-128)||(30711233-30711263)
chr8 (98-128)||(30719010-30719040)
[»] chr2 (1 HSPs)
chr2 (98-128)||(44044468-44044498)
[»] chr5 (1 HSPs)
chr5 (32-79)||(26616532-26616582)


Alignment Details
Target: chr6 (Bit Score: 160; Significance: 3e-85; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 15 - 309
Target Start/End: Complemental strand, 26464382 - 26464099
Alignment:
Q  15 cacagacgaacaacaacggaaggaggttctttctctgctgcatatcgtgcacttcaacaaccattttcatcttcaattttctagatttttgttcctgcat 114  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26464382 cacacacgaacaacaatggaaggaggttctttctctgctgcatatcgtccacttcaacaaccattttcatcttcaattttctagatttttgttcctgcat 26464283  T
Q  115 tcataaacaaaccacctgatt---------nnnnnnnnnctccacaatcaccattcatcttctcaaatccgcattcatcttctcaaatccacattcatct 205  Q
    |||||||||||||||||||||                  | ||||||||||||||||||||||||||||||||||||| ||||||||||||             
T  26464282 tcataaacaaaccacctgatttaaaaaaaaaaaaaaaaaccccacaatcaccattcatcttctcaaatccgcattcattttctcaaatcca--------- 26464192  T
Q  206 tctcaaatccgctttttcgtcttctccttcaaattgttcttccgctaattgtgctctcttcgtcctctccgaattcgccaaccgttttccgtttttgtca 305  Q
               |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26464191 -----------ctttttcgtcttctccttcaaattgttcttccgctaattgtgctctcttcgtcctctccgaattcgccaaccgttttccgtttttgtca 26464103  T

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Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 32 - 96
Target Start/End: Original strand, 13379112 - 13379176
Alignment:
Q  32 ggaaggaggttctttctctgctgcatatcgtgcacttcaacaaccattttcatcttcaattttct 96  Q
    ||||||||||||||||||| |||||||||||  ||||||||||||||||||||||||||||||||    
T  13379112 ggaaggaggttctttctctactgcatatcgtcaacttcaacaaccattttcatcttcaattttct 13379176  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 128
Target Start/End: Complemental strand, 680779 - 680749
Alignment:
Q  98 gatttttgttcctgcattcataaacaaacca 128  Q
    |||||||||||||||||||||||||||||||    
T  680779 gatttttgttcctgcattcataaacaaacca 680749  T

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Target: chr1 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 20 - 309
Target Start/End: Complemental strand, 31198103 - 31197835
Alignment:
Q  20 acgaacaacaacggaaggaggttctttctctgctgcatatcgtgcacttcaacaaccattttcatcttcaattttctagatttttgttcctgcattcata 119  Q
    |||||||||||  ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31198103 acgaacaacaattgaaggaggttcttcctctgctgcatatcgtccacttcaacaaccattttcatcttcaattttctagatttttgttcctgcattcata 31198004  T
Q  120 aacaaaccacctgattnnnnnnnnnctccacaatcaccattcatcttctcaaatccgcattcatcttctcaaatccacattcatcttctcaaatccgctt 219  Q
    ||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||                    |||||||||    
T  31198003 aacaaaccacctgatt-aaaaaaaactccacaatcaccattcatcttctcaaatccgcattcatcttctca--------------------aatccgctt 31197925  T
Q  220 tttcgtcttctccttcaaattgttcttccgctaattgtgctctcttcgtcctctccgaattcgccaaccgttttccgtttttgtcattcc 309  Q
    ||| |||||||||||||||  |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  31197924 ttttgtcttctccttcaaaccgttcttccgctaattgtgctctctccgtcctctccgaattcgccaaccgttttccatttttgtcattcc 31197835  T

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Target: scaffold0182 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 32 - 96
Target Start/End: Complemental strand, 32553 - 32489
Alignment:
Q  32 ggaaggaggttctttctctgctgcatatcgtgcacttcaacaaccattttcatcttcaattttct 96  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  32553 ggaaggaggttctttctctgctgcatatcgtcaacttcaacaaccattttcatcttcaattttct 32489  T

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Target: chr7 (Bit Score: 57; Significance: 9e-24; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 32 - 96
Target Start/End: Complemental strand, 21723917 - 21723853
Alignment:
Q  32 ggaaggaggttctttctctgctgcatatcgtgcacttcaacaaccattttcatcttcaattttct 96  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  21723917 ggaaggaggttctttctctgctgcatatcgtcaacttcaacaaccattttcatcttcaattttct 21723853  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 198 - 286
Target Start/End: Complemental strand, 37912499 - 37912411
Alignment:
Q  198 attcatcttctcaaatccgctttttcgtcttctccttcaaattgttcttccgctaattgtgctctcttcgtcctctccgaattcgccaa 286  Q
    |||||||||||||||||| ||||||| ||||||  |||| || ||||||| ||||||||||||||||| ||||| ||||||||||||||    
T  37912499 attcatcttctcaaatcctctttttcatcttcttgttcagatcgttcttctgctaattgtgctctctttgtcctttccgaattcgccaa 37912411  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 128
Target Start/End: Original strand, 20385946 - 20385976
Alignment:
Q  98 gatttttgttcctgcattcataaacaaacca 128  Q
    |||||||||||||||||||||||||||||||    
T  20385946 gatttttgttcctgcattcataaacaaacca 20385976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 128
Target Start/End: Original strand, 30711233 - 30711263
Alignment:
Q  98 gatttttgttcctgcattcataaacaaacca 128  Q
    |||||||||||||||||||||||||||||||    
T  30711233 gatttttgttcctgcattcataaacaaacca 30711263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 128
Target Start/End: Original strand, 30719010 - 30719040
Alignment:
Q  98 gatttttgttcctgcattcataaacaaacca 128  Q
    |||||||||||||||||||||||||||||||    
T  30719010 gatttttgttcctgcattcataaacaaacca 30719040  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 128
Target Start/End: Original strand, 44044468 - 44044498
Alignment:
Q  98 gatttttgttcctgcattcataaacaaacca 128  Q
    |||||||||||||||||||||||||||||||    
T  44044468 gatttttgttcctgcattcataaacaaacca 44044498  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 79
Target Start/End: Original strand, 26616532 - 26616582
Alignment:
Q  32 ggaaggaggttctttctctgctgca---tatcgtgcacttcaacaaccatt 79  Q
    |||||||| ||||||||||||||||   |||||| ||||||||||||||||    
T  26616532 ggaaggagcttctttctctgctgcagcatatcgtccacttcaacaaccatt 26616582  T

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