View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4715_low_1 (Length: 397)
Name: NF4715_low_1
Description: NF4715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4715_low_1 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 161; Significance: 9e-86; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 195 - 397
Target Start/End: Original strand, 10992414 - 10992609
Alignment:
| Q |
195 |
gcataaaacttagatgcagtcctttgcctattgttctacactacatatgcataacaaaggtcaaaaactcgacgaagaggtgcattatcaaactgttatt |
294 |
Q |
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| T |
10992414 |
gcataaaacttagatgcagtcctttacctattgttctacactacatat-------aaaggtcaaaaactcgacgaagaggtgcattataaaactgttatt |
10992506 |
T |
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| Q |
295 |
ttctacatgtcaattaaaagtaaccgttttttatgtctagcacaataccaacagtacgtaaggaacactgcatctaagttttacattaaactcaaacact |
394 |
Q |
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| T |
10992507 |
ttctacatgtaaattaaaagtaaccgttttttatgtctagcacaataccaacagtacgtaaggaacactgcatctaagttttaccttaaactcaaacact |
10992606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 10 - 123
Target Start/End: Original strand, 10992229 - 10992342
Alignment:
| Q |
10 |
acatcatcacttccctttccggatccaaatccaaatggacacactccagaaccacatctccttgcactaaacattgaatatcaatcttaatcacatcaca |
109 |
Q |
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| T |
10992229 |
acatcatcacttccctttccggatccaaatccaaatggacacactccagaaccacatctccttgcactaaacattgaatatcaatcttaatcacatcaca |
10992328 |
T |
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| Q |
110 |
gtctacctgagatt |
123 |
Q |
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| T |
10992329 |
gtctacctgagatt |
10992342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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