View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4716-Insertion-1 (Length: 832)
Name: NF4716-Insertion-1
Description: NF4716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4716-Insertion-1 |
 | |
|
| [»] scaffold0596 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 537; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 7 - 571
Target Start/End: Complemental strand, 2991476 - 2990912
Alignment:
| Q |
7 |
aaaaccttcttcaaattctttttggtggttttagacaccacttcggtgaaaggctcttcagtagcactagagcaattcttcaaataattgatagcagcct |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
2991476 |
aaaaccttcttcaaattctttttggtggttttagacaccacttcggtgaaaggctcttcagtagcactagagcagttcttcaaataattgatagcagcct |
2991377 |
T |
|
| Q |
107 |
ttatctcttcttcatcagtataaacgcgaggcttcgtatttgcaacatcatttcctttgcaagcatacttcctcaaaatctccatcatgggtgacaatcg |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2991376 |
ttatctcttcttcatcagtataaacgcgaggcttcgtatttgcaacatcatttcctttgcaagcatacttcctcaaaatctccatcatgggtgacaatcg |
2991277 |
T |
|
| Q |
207 |
gatttaaattatcatcagcaacaacattcaattttttcaatgtatcattccatgaaccaaccaaacgcatatcaagataatcctccttctgtggctcaca |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
2991276 |
gatttaaattatcatcagcaacaacattcaatttttccaatgtatcattccatgaaccaaccaaacgcatatcaagataatcctccctctgtggttcaca |
2991177 |
T |
|
| Q |
307 |
attagttgaattagaagaaccagatccaaagacatcatgaatggcatttttagagcgctcttcggtagaaacactcaaattctcattactttgagcaccc |
406 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2991176 |
attagctgaattagaagaaccagatccaaagacatcatgaatggcctttttagagcgctcttcggtagaaacactcaaattctcattactttgagcaccc |
2991077 |
T |
|
| Q |
407 |
atgtcttcttgatgcatggtatcaatacacacaacctctcgatcaacaatggttttcaaatcgttagcagattccaaatgagggttattatcgactcatg |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2991076 |
atgtcttcttgatgcatggtatcaatacacacaacctctcgatcaataatggttttcaaatcgttagcagattccaaatgagggttattatcgactcatg |
2990977 |
T |
|
| Q |
507 |
tttcagtgacattatttgtcacacaatcagtatagttgattccttacccaaatcatccttctgaa |
571 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2990976 |
tttcagtgacattatttgtcacacaatcagtatagttgattccttacccaaatcatccttctgaa |
2990912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 382; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 7 - 669
Target Start/End: Original strand, 7627107 - 7627763
Alignment:
| Q |
7 |
aaaaccttcttcaaattctttttggtggttttagacaccacttcggtgaaaggctcttcagtagcactagagcaattcttcaaataattgatagcagcct |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||| |||||||||||||||||| |||||| |
|
|
| T |
7627107 |
aaaaccttcttcaaattctttttggtggttttagacaccactttggtgaaaggctcttctgtagcagtagagcggttcttcaaataattgatatcagcct |
7627206 |
T |
|
| Q |
107 |
ttatctcttcttcatcagtataaacgcgaggcttcgtatttgcaacatcatttcctttgcaagcatacttcctcaaaatctcca--tcatgggtgacaat |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||||| | ||||| | |||||| |
|
|
| T |
7627207 |
ctatctcttcttcatcagtataaacgcgaggccccatatttgcaacatcattacctttgcaagcatacttcctcaaaatctcaatgtcatgagcgacaat |
7627306 |
T |
|
| Q |
205 |
cggatttaaattatcatcagcaacaacattcaattttttcaatgtatcattccatgaaccaaccaaacgcatatcaagataatcctccttctgtggctca |
304 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| || || ||||||||||| |||||||||||||||| |||||||||| ||||||| ||| |
|
|
| T |
7627307 |
gggatttaaattatcatcaacaacaacattcaatttttccattgcatcattccatg----aaccaaacgcatatcaggataatcctctctctgtggttca |
7627402 |
T |
|
| Q |
305 |
caattagttgaattagaagaaccagatccaaagacatcatgaatggcatttttagagcgctcttcggtagaaacactcaaattctcattactttgagcac |
404 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||| ||||||||| |
|
|
| T |
7627403 |
caattagctgaattagaagatccagatccaaagacatcatgaatggcctttttagagcgctcttcgatagaaacactcaatttctcatta-tttgagcac |
7627501 |
T |
|
| Q |
405 |
ccatgtcttcttgatgcatggtatcaa---tacacacaacctctcgatcaacaatggttttcaaatcgttagcagattccaaatgagggttattatcgac |
501 |
Q |
| |
|
||||||||||||||||||| |||||| ||| ||||||||||| ||||||| | ||||||||| | ||||||||||||||||| || ||||| ||||| |
|
|
| T |
7627502 |
tcatgtcttcttgatgcatgatatcaatagtactcacaacctctccatcaacagttgttttcaaaaccttagcagattccaaatgtggattattgtcgac |
7627601 |
T |
|
| Q |
502 |
tcatgtttcagtgacattatttgtcacacaatcagtatagttgattccttacccaaatcatccttctgaacaggaacatattttttcccctaacacctat |
601 |
Q |
| |
|
||||||||||||||||||||||||||||||| | |||| ||||| ||||||||||||||||| |||| ||||||||||||| ||| | ||| ||| |
|
|
| T |
7627602 |
acatgtttcagtgacattatttgtcacacaat-----tcgttggttcctcacccaaatcatccttctaaacaagaacatatttttt-cccaagcacttat |
7627695 |
T |
|
| Q |
602 |
gcttctcatgagtgatcactttgtattggtttactttaacaagattacaattagaaaaactatgacca |
669 |
Q |
| |
|
||||||||||||| |||||||| | |||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
7627696 |
gcttctcatgagttatcactttctcttggtttactttaacaagtttacaattagaaaaactatgacca |
7627763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 262; E-Value: 1e-145
Query Start/End: Original strand, 15 - 691
Target Start/End: Complemental strand, 36708513 - 36707857
Alignment:
| Q |
15 |
cttcaaattctttttggtg-gttttagacaccacttcggtgaaaggctcttcagtagcactagagcaattcttcaaataattgatagcagcctttatctc |
113 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||||| ||||| ||||| || |||||| || ||| ||||||||||| ||||||||||||| | ||| |
|
|
| T |
36708513 |
cttcaaattcttttttgtgtgttttagacaccacttccgtgaatggctcctctgtagcagtaaagcggttcttcaaatacttgatagcagcctctttct- |
36708415 |
T |
|
| Q |
114 |
ttcttcatcagtataaacgcgaggcttcgtatttgcaacatcatttcctttgcaagcatacttcctcaaaatctccat--catgggtgacaatcggattt |
211 |
Q |
| |
|
|| |||| ||||||||| ||||| || |||||||||||||| |||||||||||||||| |||||||||||| || |||| | ||| | || ||| |
|
|
| T |
36708414 |
-tcctcattagtataaacacgaggtgtcatatttgcaacatca---cctttgcaagcatactgcctcaaaatctctatgtcatgagcgaccctggggttt |
36708319 |
T |
|
| Q |
212 |
aaattatcatcagcaacaacattcaattttttcaatgtatcattccatgaaccaaccaaacgcatatcaagataatcctccttctgtggctcacaattag |
311 |
Q |
| |
|
|||||||| ||| ||||||||||| |||| | ||||| ||||||||||||||||||||||||||||||| |||||| ||| | | ||| |||||||||| |
|
|
| T |
36708318 |
aaattatcgtcaccaacaacattcgatttatccaatgcatcattccatgaaccaaccaaacgcatatcaggataatgctctctatttggttcacaattag |
36708219 |
T |
|
| Q |
312 |
ttgaattagaagaaccagatccaaagacatcatgaatggcatttttagagcgctcttcggtagaaacactcaaattctcattactttgagcacccatgtc |
411 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| | |||||||||||||||| |||||||||||||||| ||| |||| ||||||||||||| | |
|
|
| T |
36708218 |
ctgaattagaagaatcagatccaaagacatcatgaatgacctttttagagcgctctttagtagaaacactcaaatgctctttacattgagcacccatgac |
36708119 |
T |
|
| Q |
412 |
ttcttgatgcatggtatcaatacacacaacctctcgatcaacaatggttttcaaatcgttagcagattccaaatgagggttattatcgactcatgtttca |
511 |
Q |
| |
|
||||| ||||| ||||||||||| ||||||||||| ||||||| ||||||||||| | |||||||||||||||||||| ||| ||||| || |
|
|
| T |
36708118 |
ttcttcatgcacggtatcaatactcacaacctctccatcaacattggttttcaaaac---------ttccaaatgagggttattatggacacatgtaaca |
36708028 |
T |
|
| Q |
512 |
gtgacattatttgtcacacaatcagtatagttgattccttacccaaatcatccttctgaacaggaacatattttttcccctaacacctatgcttctcatg |
611 |
Q |
| |
|
|||||||||||||||| |||||| |||| |||||| || ||| ||||||||||||||||||||| ||||||||| | ||| ||||||||||||| |
|
|
| T |
36708027 |
gtgacattatttgtcaaacaatc-----ggttggttcctttccgaaaacatccttctgaacaggaacat-ttttttccctaagcacttatgcttctcatg |
36707934 |
T |
|
| Q |
612 |
agtgatcactttgtattggtttactttaacaagattacaattagaaaaactatgaccaaatatgttacggcaatgcgaac |
691 |
Q |
| |
|
|||||||||||| | |||||||||||||||||| |||||| ||||||||||||||| | |||||||||||||| |||| |
|
|
| T |
36707933 |
agtgatcactttctcttggtttactttaacaagtttacaactagaaaaactatgacta---atgttacggcaatgtgaac |
36707857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 180; E-Value: 9e-97
Query Start/End: Original strand, 171 - 511
Target Start/End: Original strand, 23279354 - 23279696
Alignment:
| Q |
171 |
atacttcctcaaaatctccat--catgggtgacaatcggatttaaattatcatcagcaacaacattcaattttttcaatgtatcattccatgaaccaacc |
268 |
Q |
| |
|
||||||| ||||||||||||| |||| | |||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
23279354 |
atacttcatcaaaatctccatgtcatgagcgacaataggatttaaattatcatcagcaacaacattcgattttttcaatgcatcattccatgaaccaacc |
23279453 |
T |
|
| Q |
269 |
aaacgcatatcaagataatcctccttctgtggctcacaattagttgaattagaagaaccagatccaaagacatcatgaatggcatttttagagcgctctt |
368 |
Q |
| |
|
|||||||||||| || ||||||| ||| || |||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||| || || |
|
|
| T |
23279454 |
aaacgcatatcaggacaatcctctccctgaggttcacaattagctgaattagaagaaccagatccaaagacatcataaatggcctttttagagcactatt |
23279553 |
T |
|
| Q |
369 |
cggtagaaacactcaaattctcattactttgagcacccatgtcttcttgatgcatggtatcaatacacacaacctctcgatcaacaatggttttcaaatc |
468 |
Q |
| |
|
| ||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||| |||||||||| |||||| ||||||||||| | |
|
|
| T |
23279554 |
ccgtagaaacactcaaattatcattactttgagcacatatgtcttcttgaggcatggtatcaataccaacaacctctccatcaacggtggttttcaaaac |
23279653 |
T |
|
| Q |
469 |
gttagcagattccaaatgagggttattatcgactcatgtttca |
511 |
Q |
| |
|
|| || ||| ||||||| | ||||| ||||| ||||||||| |
|
|
| T |
23279654 |
attcacatatttcaaatgatgattattgtcgacacatgtttca |
23279696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 513 - 691
Target Start/End: Original strand, 23280946 - 23281116
Alignment:
| Q |
513 |
tgacattatttgtcacacaatcagtatagttgattccttacccaaatcatccttctgaacaggaacatattttttcccctaacacctatgcttctcatga |
612 |
Q |
| |
|
||||||||||||||||||||||||| || |||||| ||||||||||||||||||||| |||||| |||||| ||| | ||| |||||||||||||| |
|
|
| T |
23280946 |
tgacattatttgtcacacaatcagt-----tggttcctttcccaaatcatccttctgaacaagaacatgtttttttcccaagcacttatgcttctcatga |
23281040 |
T |
|
| Q |
613 |
gtgatcactttgtattggtttactttaacaagattacaattagaaaaactatgaccaaatatgttacggcaatgcgaac |
691 |
Q |
| |
|
||||||||||| | |||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
23281041 |
gtgatcactttctcttggtttactttaacaagtttacaattagaaaaactatgtcca---atgttacggcaatgcgaac |
23281116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 6 - 94
Target Start/End: Original strand, 23279267 - 23279355
Alignment:
| Q |
6 |
caaaaccttcttcaaattctttttggtggttttagacaccacttcggtgaaaggctcttcagtagcactagagcaattcttcaaataat |
94 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| ||| || ||||| || |||||| || || ||||||||||||| |
|
|
| T |
23279267 |
caaacccttcttcaaattctttttggtggttttagacaccactttggtaaagggctcctctgtagcagtaaagtggttcttcaaataat |
23279355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 171 - 670
Target Start/End: Complemental strand, 26303800 - 26303304
Alignment:
| Q |
171 |
atacttcctcaaaatctccat--catgggtgacaatcggatttaaattatcatcagcaacaacattcaattttttcaatgtatcattccatgaaccaacc |
268 |
Q |
| |
|
||||||| ||||||||||||| |||| | || || |||||||||||||||||||||||| ||||| ||||| ||||| ||||||||||||||||||| |
|
|
| T |
26303800 |
atacttcatcaaaatctccatgtcatgagcaacgatgggatttaaattatcatcagcaacaccattccctttttccaatgcatcattccatgaaccaacc |
26303701 |
T |
|
| Q |
269 |
aaacgcatatcaagataatcctccttctgtggctcacaattagttgaattagaagaaccagatccaaagacatcatgaatggcatttttagagcgctctt |
368 |
Q |
| |
|
||| |||||||| || ||||||| | || || |||||||||| |||||||||| ||| ||||||||||||||||| |||||| |||||||| | ||||| |
|
|
| T |
26303700 |
aaatgcatatcaggacaatcctctctttgaggttcacaattagctgaattagaaaaacaagatccaaagacatcataaatggcctttttagatcactctt |
26303601 |
T |
|
| Q |
369 |
cggtagaaacactcaaattctcattactttgagcacccatgtcttcttgatgcatggtatcaatacacacaacctctcgatcaacaatggttttcaaatc |
468 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |||||||||||| ||||| |||||||| |||||||| || ||||||| ||| ||||||| | |
|
|
| T |
26303600 |
aagtagaaacactgaaattctcattactttgagcacatatgtcttcttgaggcatgacatcaatactcacaacctttccatcaacagtggatttcaaaac |
26303501 |
T |
|
| Q |
469 |
gttagcagattccaaatgagggttattatcgactcatgtttcagtgacattatttgtcacacaatcagtatagttgattccttacccaaatcatccttct |
568 |
Q |
| |
|
|| ||||||| ||||||| | ||||| ||||| ||||||||| ||||||||||||| |||| |||||| || |||||| ||||||||||| |||| |
|
|
| T |
26303500 |
attcgcagatttcaaatgatgattattgtcgacacatgtttcaatgacattatttgtgacacgatcagt-----tggttcctttcccaaatcatcattct |
26303406 |
T |
|
| Q |
569 |
gaacaggaacatattttttcccctaacacctatgcttctcatgagtgatcactttgtattggtttactttaacaagattacaattagaaaaactatgacc |
668 |
Q |
| |
|
|||| |||||| |||||||||| | ||| ||||||||||||||||||||||||| | |||| ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
26303405 |
gaactagaacatgttttttccccaagcacttatgcttctcatgagtgatcactttctcttgggttactttaacaagtttacaattagaaaaactatgacc |
26303306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 26303882 - 26303799
Alignment:
| Q |
11 |
ccttcttcaaattctttttggtggttttagacaccacttcggtgaaaggctcttcagtagcactagagcaattcttcaaataat |
94 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||| ||||| || |||||| |||||| ||||||||||||| |
|
|
| T |
26303882 |
ccttcttcaaattctttttggtggttttagacaccactttggtgaagggctcctctgtagcagtagagcggttcttcaaataat |
26303799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 14 - 120
Target Start/End: Original strand, 13613549 - 13613653
Alignment:
| Q |
14 |
tcttcaaattctttttggtggttttagacaccacttcggtgaaaggctcttcagtagcactagagcaattcttcaaataattgatagcagcctttatctc |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||| ||||| || |||||| |||| | |||||||| ||||||||||||||| | | || |
|
|
| T |
13613549 |
tcttcaaattctttttggtggttttagacaccactttggtgaagggctcctctgtagcagtagaacggttcttcaa--aattgatagcagcctctctttc |
13613646 |
T |
|
| Q |
114 |
ttcttca |
120 |
Q |
| |
|
||||||| |
|
|
| T |
13613647 |
ttcttca |
13613653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 378 - 423
Target Start/End: Original strand, 41799657 - 41799702
Alignment:
| Q |
378 |
cactcaaattctcattactttgagcacccatgtcttcttgatgcat |
423 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||||| ||||||| |
|
|
| T |
41799657 |
cactcaaattctcattaccttgagcaaccatgtcttctggatgcat |
41799702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 151; Significance: 2e-79; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 11 - 350
Target Start/End: Original strand, 24288093 - 24288433
Alignment:
| Q |
11 |
ccttcttcaaattctttttggtggttttagacaccacttcggtgaaaggctcttcagtagcactagagcaattcttcaaataattgatagcagcctttat |
110 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||| ||||| || |||||| || ||| |||||||||||| |||||||| ||| ||| |
|
|
| T |
24288093 |
ccttcttcaaattctttttggtagttttagacaccacttcggtgaagggctcctctgtagcagtaaagcggttcttcaaataactgatagcaacctctat |
24288192 |
T |
|
| Q |
111 |
ctcttcttcatcagtataaacgcgaggcttcgtatttgcaacatcatttcctttgcaagcatacttcctcaaaatctccat--catgggtgacaatcgga |
208 |
Q |
| |
|
||||||||||||| ||||||| |||||| || |||||||||||||||||||||||||| |||||| ||||||||||| ||| |||| || | | ||| |
|
|
| T |
24288193 |
ctcttcttcatcaatataaacacgaggcctcatatttgcaacatcatttcctttgcaaacatactccctcaaaatcttcatgccatgagtaaagttggga |
24288292 |
T |
|
| Q |
209 |
tttaaattatcatcagcaacaacattcaattttttcaatgtatcattccatgaaccaaccaaacgcatatcaagataatcctccttctgtggctcacaat |
308 |
Q |
| |
|
||||||||||||||||||||||||||| | |||| ||||| || |||||| ||||||||||||| |||||| ||||||||||| ||| | | || ||| |
|
|
| T |
24288293 |
tttaaattatcatcagcaacaacattcga-ttttccaatgcattattccacgaaccaaccaaacatatatcaggataatcctccctctattgttcctaat |
24288391 |
T |
|
| Q |
309 |
tagttgaattagaagaaccagatccaaagacatcatgaatgg |
350 |
Q |
| |
|
| | |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
24288392 |
ttgcgtaattagaagaaccatatccaaagacatcatgaatgg |
24288433 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 378 - 415
Target Start/End: Complemental strand, 28430541 - 28430504
Alignment:
| Q |
378 |
cactcaaattctcattactttgagcacccatgtcttct |
415 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
28430541 |
cactcaaattctcattacattgagcaaccatgtcttct |
28430504 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 9e-23; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 250 - 453
Target Start/End: Original strand, 14097545 - 14097748
Alignment:
| Q |
250 |
atcattccatgaaccaaccaaacgcatatcaagataatcctccttctgtggctcacaattagttgaattagaagaaccagatccaaagacatcatgaatg |
349 |
Q |
| |
|
|||| ||||||||||||| || ||||||||| |||||| |||| | ||| | ||| |||||||||| ||| || ||||||||| ||||||||| |
|
|
| T |
14097545 |
atcactccatgaaccaacgaagcgcatatcaggataatgctccctttgttgttcattgttagttgaatcagacgagttggatccaaaggtatcatgaata |
14097644 |
T |
|
| Q |
350 |
gcatttttagagcgctcttcggtagaaacactcaaattctcattactttgagcacccatgtcttcttgatgcatggtatcaatacacacaacctctcgat |
449 |
Q |
| |
|
|| |||||| | ||||||| ||||||||||||||||||||||||| | ||||||||||| ||| |||||| ||||||||||| ||| || |||| || |
|
|
| T |
14097645 |
gcctttttacaatgctcttcagtagaaacactcaaattctcattaccgttggcacccatgtcatctggatgcaaggtatcaatactcactacttctccat |
14097744 |
T |
|
| Q |
450 |
caac |
453 |
Q |
| |
|
|||| |
|
|
| T |
14097745 |
caac |
14097748 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 329 - 464
Target Start/End: Original strand, 27623746 - 27623881
Alignment:
| Q |
329 |
gatccaaagacatcatgaatggcatttttagagcgctcttcggtagaaacactcaaattctcattactttgagcacccatgtcttcttgatgcatggtat |
428 |
Q |
| |
|
||||||||||| || ||||| || |||||||| |||||||| ||||||||||||||||||| |||| ||| ||||||||||| ||| |||| | ||||| |
|
|
| T |
27623746 |
gatccaaagacctcctgaatagcctttttagaccgctcttcagtagaaacactcaaattcttgttaccttgggcacccatgtcatctagatgtaaggtat |
27623845 |
T |
|
| Q |
429 |
caatacacacaacctctcgatcaacaatggttttca |
464 |
Q |
| |
|
|| ||| ||||| || | ||||||||||||||||| |
|
|
| T |
27623846 |
cattacttacaacttccccatcaacaatggttttca |
27623881 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 616 - 668
Target Start/End: Original strand, 11493202 - 11493254
Alignment:
| Q |
616 |
atcactttgtattggtttactttaacaagattacaattagaaaaactatgacc |
668 |
Q |
| |
|
|||||||| | |||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
11493202 |
atcactttctcttggtttactttaacaagtttgcaattagaaaaactatgacc |
11493254 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 138
Target Start/End: Original strand, 29170203 - 29170319
Alignment:
| Q |
22 |
ttctttttggtggttttagacaccacttcggtgaaaggctcttcagtagcactagagcaattcttcaaataattgatagcagcctttatctcttcttcat |
121 |
Q |
| |
|
|||||||| |||| |||||||||||||| ||||| |||||||| || ||| ||| | |||||||||||| |||| || |||| | | ||||| |||| |
|
|
| T |
29170203 |
ttctttttcgtggccttagacaccacttcagtgaagggctcttctgtggcagcagaacgattcttcaaatatatgattgccgcctctctatcttcctcat |
29170302 |
T |
|
| Q |
122 |
cagtataaacgcgaggc |
138 |
Q |
| |
|
|||| ||||| |||||| |
|
|
| T |
29170303 |
cagtgtaaacccgaggc |
29170319 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0596 (Bit Score: 55; Significance: 4e-22; HSPs: 1)
Name: scaffold0596
Description:
Target: scaffold0596; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 250 - 464
Target Start/End: Original strand, 2326 - 2540
Alignment:
| Q |
250 |
atcattccatgaaccaaccaaacgcatatcaagataatcctccttctgtggctcacaattagttgaattagaagaaccagatccaaagacatcatgaatg |
349 |
Q |
| |
|
|||| |||||||||||||||| ||||||||| |||||| |||| | | | | ||| ||||||||| ||| || | ||||||||| ||||| ||| |
|
|
| T |
2326 |
atcactccatgaaccaaccaagcgcatatcaggataatgctccctttattgatcattgttagttgaaacagacgagctggatccaaaggtatcataaata |
2425 |
T |
|
| Q |
350 |
gcatttttagagcgctcttcggtagaaacactcaaattctcattactttgagcacccatgtcttcttgatgcatggtatcaatacacacaacctctcgat |
449 |
Q |
| |
|
|| |||||| | ||||||||||||||||||||||| |||||||||| | |||||| |||| ||| |||||| ||||||||| | |||||| |||| || |
|
|
| T |
2426 |
gcctttttacaacgctcttcggtagaaacactcaacttctcattaccgttggcacccgtgtcatctggatgcaaggtatcaatgctcacaacttctccat |
2525 |
T |
|
| Q |
450 |
caacaatggttttca |
464 |
Q |
| |
|
||||| ||| ||||| |
|
|
| T |
2526 |
caacagtggctttca |
2540 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 6e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 25 - 188
Target Start/End: Complemental strand, 25979450 - 25979294
Alignment:
| Q |
25 |
tttttggtggttttagacaccacttcggtgaaaggctcttcagtagcactagagcaattcttcaaataattgatagcagcctttatctcttcttcatcag |
124 |
Q |
| |
|
||||| |||||||||||||||||||| ||||| ||||| || |||| | ||||||| |||||||||| |||||||||| | ||||||| ||||| | |
|
|
| T |
25979450 |
ttttttgtggttttagacaccacttccgtgaagggctcctctgtagtagtagagcagctcttcaaatacttgatagcag----tctctcttcctcatcgg |
25979355 |
T |
|
| Q |
125 |
tataaacgcgaggcttcgtatttgcaacatcatttcctttgcaagcatacttcctcaaaatctc |
188 |
Q |
| |
|
||||||| ||||| || |||||||||||||| | |||||||||||||| ||||||| |||| |
|
|
| T |
25979354 |
tataaacatgaggcctcatatttgcaacatca---catttgcaagcatactgcctcaaagtctc |
25979294 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 378 - 423
Target Start/End: Original strand, 42110642 - 42110687
Alignment:
| Q |
378 |
cactcaaattctcattactttgagcacccatgtcttcttgatgcat |
423 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||||| ||||||| |
|
|
| T |
42110642 |
cactcaaattctcattaccttgagcaaccatgtcttctggatgcat |
42110687 |
T |
|
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