View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4716-Insertion-18 (Length: 82)
Name: NF4716-Insertion-18
Description: NF4716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4716-Insertion-18 |
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Alignment Details
Target: chr2 (Bit Score: 37; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 40834794 - 40834830
Alignment:
| Q |
7 |
acatgaaaacaagattaagcttctccaccaaaatcca |
43 |
Q |
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| T |
40834794 |
acatgaaaacaagattaagcttctccaccaaaatcca |
40834830 |
T |
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Target: chr2; HSP #2
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 66
Target Start/End: Original strand, 40834843 - 40834874
Alignment:
| Q |
35 |
caaaatccaaacttccactttactgattttcc |
66 |
Q |
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| T |
40834843 |
caaaatccaaacttccactttactcattttcc |
40834874 |
T |
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