View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4716-Insertion-3 (Length: 793)
Name: NF4716-Insertion-3
Description: NF4716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4716-Insertion-3 |
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Alignment Details
Target: chr1 (Bit Score: 515; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 8 - 542
Target Start/End: Original strand, 45715494 - 45716028
Alignment:
| Q |
8 |
aaagggttataagaaagatcaagctttgtcaacaattcaaggttttccatttcttcaggtaatggaccctcaatcaaacaagaaggcgaatacagaactt |
107 |
Q |
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| T |
45715494 |
aaagggttataagaaagatcgagctttgtcaacaattcaaggttttccatttcttcaggtaatggaccctcaatcaaacaagaaggcgaatacagaactt |
45715593 |
T |
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| Q |
108 |
caagctttgtaagctctccaatttccttaggcaatgtaccagacaacttgttcatcccaacgtaaagtgcagtcaaattcttccaattcccaatctccgg |
207 |
Q |
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| T |
45715594 |
caagctttgtaagctctccaatttccttaggcaatgtaccagacaacttgttcatcccaacgtaaagtgcagtcaaattcttccaattcccaatctccgg |
45715693 |
T |
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| Q |
208 |
tggaatttcgccggaaaacgagttgtttgaaatatcaatagaaatcaaattcaccgttccggtaaaaagacttaacggaagagaacctgaaagtatgtta |
307 |
Q |
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| T |
45715694 |
tggaatttcgccggaaaacgagttgtttgaaatatcaatagaaatcaaattcacagttccggtaaaaagacttaacggaagagaacctgaaagtatgtta |
45715793 |
T |
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| Q |
308 |
ttgctaaggtctaaaaactgaagctttgtcaagtttccaaaactctccggtatatctccggcgagtgcattaccggaaagatcaagtgtacgtagtttag |
407 |
Q |
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| T |
45715794 |
ttgctaaggtctaaaaactgaagctttgtcaagtttccaaaactctccggtatatctccggcgagtgcattaccggaaagatcaagtgtacgtagtttat |
45715893 |
T |
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| Q |
408 |
ttaaaaaaccaaactccggtggaatttttccggcgaaagagtttgaaccgaggcttagagtttctagctgaaacaaccccccaagctcaccggggagttc |
507 |
Q |
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| T |
45715894 |
ttaaaaaaccaaaatccggtggaatttttccggcgaaagagtttgaaccgaggcttagagtttctagctgaaacaacccaccaagctcaccggggagttc |
45715993 |
T |
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| Q |
508 |
accggaaaactgattatcttcaaggttgagtaagg |
542 |
Q |
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| T |
45715994 |
accggaaaactgattatcttcaaggttgagtaagg |
45716028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 621 - 791
Target Start/End: Original strand, 45716105 - 45716272
Alignment:
| Q |
621 |
tgcggtaactcgaccgagttgacacggttacaccaacccatttacagtgtgaagtagtattgtgccacgaagaaagaaagtgtgaattttgaagtgaccc |
720 |
Q |
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| T |
45716105 |
tgcggtaactcgaccgagttgacacg-ttacaccaacccatttacagtgtgaagtagtattgtgccatgaagaaagaaagtgtgaattttgaagtgaccc |
45716203 |
T |
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| Q |
721 |
ttttgaaagaaaggagggaaagtttttctgggttttgggtcgttaatggcgtaagataggtggaaaatgag |
791 |
Q |
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| T |
45716204 |
-tttgaaagaaaggagggaaagtttttctgggtttt-ggtcgttaatggcgtaagaaaggtggaaaatgag |
45716272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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