View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4716-Insertion-4 (Length: 690)
Name: NF4716-Insertion-4
Description: NF4716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4716-Insertion-4 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 630; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 630; E-Value: 0
Query Start/End: Original strand, 8 - 690
Target Start/End: Original strand, 33401014 - 33401694
Alignment:
| Q |
8 |
tgcatatacacacacaacaatataaacaacgtcaacaaaaaatatcttcacccataaaagcaatgacagaaaaaccataatgtataaagatgatgaagaa |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33401014 |
tgcatatacacacacaacaatataaacaacgtcaacaaaaaatatcttcacccataaaagcaatgacagaaaaaccataatgtataaagatgatgaagaa |
33401113 |
T |
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| Q |
108 |
tgtatagtttttcctcaccttggcttcatcaaatacataagtaggaaaactagagagtacaccaaggaaagtccaccaatgaggatatatgcaatcccca |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
33401114 |
tgtatagtttttcctcaccttggcttcatcaaatacataagtaggaaaactagagagtacaccaaggaaagtccaccaatgagaatatatgcaatcccca |
33401213 |
T |
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| Q |
208 |
agaaatcattttttccaccaatccatgttgtggttgatagaatcacactctttgttcctccaaattgatatgtattataattgttctctattactacagt |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
33401214 |
agaaatcattttttccaccaatccatgttgtggttgatagaatcacactctttgttcctccaaattgatatgtattataattgttctctattactaccgt |
33401313 |
T |
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| Q |
308 |
tatttcatcgttagcttcaaggtcgacttcaatcttcccgtataattttctgaatgtaggcagtgctgctgttctcatccatacaatcagatcctcttgt |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33401314 |
tatttcatcgttagcttcaaggtcgacttcaatcttcccgtataattttctgaatgtaggcagtgctgctgttctcatccatacaatcagatcctcttgt |
33401413 |
T |
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| Q |
408 |
tcactcaactgtttcattccacatcaacacaaacaagattaattttctcaaaatgtcgacaagaaaattatatttaacacgnnnnnnnttatatagtgac |
507 |
Q |
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| T |
33401414 |
tcactcaactgtttcattccacatcaacacaaacaagattaattttctcaaaatgtcgacaagaaaattatatttaacacgaaaaaaattatatagtgac |
33401513 |
T |
|
| Q |
508 |
gaagatatataaatatttacttacaggtatgctctcattaagtctagcacccccaattaaaaccgccagtctgaaaatttttaggataaacatcagaccc |
607 |
Q |
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| T |
33401514 |
aaagatatataaatatttacttacaggtatgctctcattaagtctagcacccccaatt-aaactgccagtctgaaaatttttaggataaacatcagaccc |
33401612 |
T |
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| Q |
608 |
aaatttgggccttttggtcacttttccatgctatattctttttgttaatcaccaagtccttattattgtttgaaaatctgtat |
690 |
Q |
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| T |
33401613 |
aaattt-ggccttttggtcacttttccatgctatattctttttgttaatcaccaagtccttattattgtttgaaaatctgtat |
33401694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 7e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 312 - 418
Target Start/End: Complemental strand, 43601010 - 43600904
Alignment:
| Q |
312 |
tcatcgttagcttcaaggtcgacttcaatcttcccgtataattttctgaatgtaggcagtgctgctgttctcatccatacaatcagatcctcttgttcac |
411 |
Q |
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||||||||| ||||||| ||| || |||||||| || | ||||||||| || || | |||||||||||||||||| |||||||||||||||||||||| |
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| T |
43601010 |
tcatcgttaacttcaagatcggactctatcttcccatacagttttctgaacgttggtaatgctgctgttctcatccaaacaatcagatcctcttgttcac |
43600911 |
T |
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| Q |
412 |
tcaactg |
418 |
Q |
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||||||| |
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| T |
43600910 |
tcaactg |
43600904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 526 - 653
Target Start/End: Complemental strand, 43599615 - 43599490
Alignment:
| Q |
526 |
acttacaggtatgctctcattaagtctagcacccccaattaaaaccgccagtctgaaaatttttaggataaacatcagacccaaatttgggccttttggt |
625 |
Q |
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||||||||||| ||| ||||| ||| | ||||| ||||| ||| || ||| |||||||||||||||||||||| ||| |||||||| | |||| || |
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| T |
43599615 |
acttacaggtacgctttcattgagttttgcacctccaatcaaa-cctccactctgaaaatttttaggataaacttcatgaccaaattt-agaatttttgt |
43599518 |
T |
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| Q |
626 |
cacttttccatgctatattctttttgtt |
653 |
Q |
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| T |
43599517 |
cacttccccatgctatgttctttttgtt |
43599490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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