View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4716-Insertion-7 (Length: 480)

Name: NF4716-Insertion-7
Description: NF4716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4716-Insertion-7
NF4716-Insertion-7
[»] chr3 (29 HSPs)
chr3 (274-480)||(11769492-11769698)
chr3 (274-467)||(9849997-9850190)
chr3 (274-467)||(9839119-9839312)
chr3 (274-467)||(10363416-10363609)
chr3 (274-466)||(10663784-10663976)
chr3 (274-463)||(10089048-10089237)
chr3 (274-463)||(10195931-10196120)
chr3 (274-467)||(10433662-10433855)
chr3 (278-467)||(10527620-10527809)
chr3 (274-467)||(10077527-10077720)
chr3 (274-432)||(10032261-10032419)
chr3 (274-467)||(10375463-10375656)
chr3 (274-467)||(10580859-10581052)
chr3 (274-432)||(10127186-10127344)
chr3 (274-419)||(10184500-10184645)
chr3 (282-419)||(11781648-11781785)
chr3 (303-419)||(10517772-10517888)
chr3 (274-432)||(10260956-10261114)
chr3 (294-428)||(8861564-8861698)
chr3 (294-428)||(11130683-11130817)
chr3 (294-428)||(11148511-11148645)
chr3 (294-428)||(11159674-11159808)
chr3 (311-419)||(10500869-10500977)
chr3 (313-428)||(13161277-13161392)
chr3 (313-428)||(13171328-13171443)
chr3 (313-428)||(13289962-13290077)
chr3 (313-428)||(13333201-13333316)
chr3 (313-428)||(13344386-13344501)
chr3 (325-428)||(10889615-10889718)
[»] chr2 (1 HSPs)
chr2 (274-467)||(26907155-26907348)
[»] chr8 (2 HSPs)
chr8 (323-419)||(44957354-44957450)
chr8 (274-419)||(11485296-11485441)
[»] chr6 (1 HSPs)
chr6 (274-428)||(31679390-31679544)
[»] chr4 (1 HSPs)
chr4 (326-428)||(17852580-17852682)
[»] scaffold0083 (1 HSPs)
scaffold0083 (379-467)||(58038-58126)
[»] scaffold0002 (3 HSPs)
scaffold0002 (313-428)||(135545-135660)
scaffold0002 (313-428)||(145596-145711)
scaffold0002 (313-428)||(153901-154016)
[»] chr1 (1 HSPs)
chr1 (330-427)||(826225-826322)


Alignment Details
Target: chr3 (Bit Score: 111; Significance: 8e-56; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 274 - 480
Target Start/End: Original strand, 11769492 - 11769698
Alignment:
Q  274 cccttcattgatggaaaacctggaatcagggtgattgtaacaatacgcaaacaaaaagttgcagaggtagcacacacatttcctattcataaattagaac 373  Q
    ||||||| | ||||||||||||||| || ||||||| |||||| |||| ||| ||||||||| ||||| ||||||||||||||||| ||| ||||| |||    
T  11769492 cccttcagtaatggaaaacctggaagcatggtgattataacaacacgccaacgaaaagttgctgaggtggcacacacatttcctatacatgaattaaaac 11769591  T
Q  374 cactgtcaaatgaagattgttggtctttactctcaaagcatgcattaggaagtgatgagtttcgcaatagtaaaaacacaatccttgaagaaatcgcaaa 473  Q
      || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||| |||||||| |||||||||||| | ||     
T  11769592 ttctatcaaatgaagattgttggtctttactctcaaagcatgcattgggaagtgatgagtttcaccatagtacaaacacaacccttgaagaaataggaag 11769691  T
Q  474 gaagatt 480  Q
    |||||||    
T  11769692 gaagatt 11769698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 274 - 467
Target Start/End: Original strand, 9849997 - 9850190
Alignment:
Q  274 cccttcattgatggaaaacctggaatcagggtgattgtaacaatacgcaaacaaaaagttgcagaggtagcacacacatttcctattcataaattagaac 373  Q
    |||||||||||||||||||| |||| || ||||||| |||||| |||| ||||||||||||| ||||| |||||||||||||| || ||||||||||| |    
T  9849997 cccttcattgatggaaaacccggaagcatggtgattataacaacacgccaacaaaaagttgctgaggtggcacacacatttccaatacataaattagatc 9850096  T
Q  374 cactgtcaaatgaagattgttggtctttactctcaaagcatgcattaggaagtgatgagtttcgcaatagtaaaaacacaatccttgaagaaat 467  Q
      || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||  |||||||  ||||||||||||    
T  9850097 ttctatcaaatgaagattgttggtctttactctcaaagcatgcattgggaagtgatgagtttcaccatagttcaaacacagcccttgaagaaat 9850190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 274 - 467
Target Start/End: Original strand, 9839119 - 9839312
Alignment:
Q  274 cccttcattgatggaaaacctggaatcagggtgattgtaacaatacgcaaacaaaaagttgcagaggtagcacacacatttcctattcataaattagaac 373  Q
    |||||||||||||||||||| |||| || ||||||| ||||||  ||| ||||||||||||| ||||| |||||||||||||| || ||||||||||| |    
T  9839119 cccttcattgatggaaaacccggaagcatggtgattataacaacgcgccaacaaaaagttgctgaggtggcacacacatttccaatacataaattagatc 9839218  T
Q  374 cactgtcaaatgaagattgttggtctttactctcaaagcatgcattaggaagtgatgagtttcgcaatagtaaaaacacaatccttgaagaaat 467  Q
      || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||  |||||||  ||||||||||||    
T  9839219 ttctatcaaatgaagattgttggtctttactctcaaagcatgcattgggaagtgatgagtttcaccatagttcaaacacagcccttgaagaaat 9839312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 274 - 467
Target Start/End: Complemental strand, 10363609 - 10363416
Alignment:
Q  274 cccttcattgatggaaaacctggaatcagggtgattgtaacaatacgcaaacaaaaagttgcagaggtagcacacacatttcctattcataaattagaac 373  Q
    ||||||||||||||||||||||||| || ||||||| ||||||  ||| || ||||||| || ||||| ||||||||||||||||| ||||||||||| |    
T  10363609 cccttcattgatggaaaacctggaagcatggtgattataacaacgcgccaagaaaaagtagctgaggtggcacacacatttcctatacataaattagatc 10363510  T
Q  374 cactgtcaaatgaagattgttggtctttactctcaaagcatgcattaggaagtgatgagtttcgcaatagtaaaaacacaatccttgaagaaat 467  Q
      || |||||||||||||||||| |||||||||||||||||||| | |||| ||||||||||| |||||||| |||||||| ||||||||||||    
T  10363509 ttctatcaaatgaagattgttggactttactctcaaagcatgcactgggaaatgatgagtttcacaatagtacaaacacaacccttgaagaaat 10363416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 274 - 466
Target Start/End: Original strand, 10663784 - 10663976
Alignment:
Q  274 cccttcattgatggaaaacctggaatcagggtgattgtaacaatacgcaaacaaaaagttgcagaggtagcacacacatttcctattcataaattagaac 373  Q
    ||||||||||||||||||||||||| || ||||||| ||||||  ||| ||||||||||||| ||||| ||||||||||||||||| |||||||||||||    
T  10663784 cccttcattgatggaaaacctggaagcatggtgattataacaacgcgcgaacaaaaagttgctgaggtggcacacacatttcctatacataaattagaac 10663883  T
Q  374 cactgtcaaatgaagattgttggtctttactctcaaagcatgcattaggaagtgatgagtttcgcaatagtaaaaacacaatccttgaagaaa 466  Q
      || |||||||||||||||||||| ||||| |||||||||||||| ||||| || ||||||| | |||||  |||||||| |||||||||||    
T  10663884 ttctatcaaatgaagattgttggtccttactttcaaagcatgcattgggaagcgacgagtttcaccatagttcaaacacaacccttgaagaaa 10663976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 274 - 463
Target Start/End: Original strand, 10089048 - 10089237
Alignment:
Q  274 cccttcattgatggaaaacctggaatcagggtgattgtaacaatacgcaaacaaaaagttgcagaggtagcacacacatttcctattcataaattagaac 373  Q
    ||||||||||||||||||||||||| || ||||||| ||||||  ||| || ||||||| || ||||| ||||||||||||||||| |||||||||||||    
T  10089048 cccttcattgatggaaaacctggaagcatggtgattataacaacgcgccaagaaaaagtagctgaggtggcacacacatttcctatacataaattagaac 10089147  T
Q  374 cactgtcaaatgaagattgttggtctttactctcaaagcatgcattaggaagtgatgagtttcgcaatagtaaaaacacaatccttgaag 463  Q
      ||||||||||||||||||||| |||||||||||||||||||||| || | |||| |||||| | |||||| |||||||| ||||||||    
T  10089148 ttctgtcaaatgaagattgttggactttactctcaaagcatgcattgggcaatgataagtttccccatagtacaaacacaacccttgaag 10089237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 274 - 463
Target Start/End: Original strand, 10195931 - 10196120
Alignment:
Q  274 cccttcattgatggaaaacctggaatcagggtgattgtaacaatacgcaaacaaaaagttgcagaggtagcacacacatttcctattcataaattagaac 373  Q
    ||||||||||||||||||||||||| || ||||||| ||||||  ||| || ||||||| || ||||| ||||||||||||||||| |||||||||||||    
T  10195931 cccttcattgatggaaaacctggaagcatggtgattataacaacgcgccaagaaaaagtagctgaggtggcacacacatttcctatacataaattagaac 10196030  T
Q  374 cactgtcaaatgaagattgttggtctttactctcaaagcatgcattaggaagtgatgagtttcgcaatagtaaaaacacaatccttgaag 463  Q
      ||||||||||||||||||||| |||||||||||||||||||||| || | |||| |||||| | |||||| |||||||| ||||||||    
T  10196031 ttctgtcaaatgaagattgttggactttactctcaaagcatgcattgggcaatgataagtttccccatagtacaaacacaacccttgaag 10196120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 274 - 467
Target Start/End: Complemental strand, 10433855 - 10433662
Alignment:
Q  274 cccttcattgatggaaaacctggaatcagggtgattgtaacaatacgcaaacaaaaagttgcagaggtagcacacacatttcctattcataaattagaac 373  Q
    |||||||||||||||||||| |||| || ||||||| ||||||  ||| ||||||||||||| ||||| ||||||||||||||||| |||||||||||||    
T  10433855 cccttcattgatggaaaacccggaagcatggtgattataacaacgcgccaacaaaaagttgctgaggtggcacacacatttcctatacataaattagaac 10433756  T
Q  374 cactgtcaaatgaagattgttggtctttactctcaaagcatgcattaggaagtgatgagtttcgcaatagtaaaaacacaatccttgaagaaat 467  Q
      || ||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||| |   | || |||||||| ||||||||||||    
T  10433755 ttctatcaaatgaagattgttggtctttactctcgaagcatgcattgggcagtgatgagtttcacctcaatacaaacacaacccttgaagaaat 10433662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 278 - 467
Target Start/End: Original strand, 10527620 - 10527809
Alignment:
Q  278 tcattgatggaaaacctggaatcagggtgattgtaacaatacgcaaacaaaaagttgcagaggtagcacacacatttcctattcataaattagaaccact 377  Q
    |||||||||||||||||||||  | ||||||| ||||||  | | ||| ||||||||| ||||| |||| |||||||||||| |||||| || |||   |    
T  10527620 tcattgatggaaaacctggaagtatggtgattataacaacccaccaacgaaaagttgctgaggtggcacgcacatttcctatacataaactaaaactttt 10527719  T
Q  378 gtcaaatgaagattgttggtctttactctcaaagcatgcattaggaagtgatgagtttcgcaatagtaaaaacacaatccttgaagaaat 467  Q
     ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||| ||||||||||||    
T  10527720 atcaaatgaagattgttggtctttactctcaaagcatgcattgggaagtgatgagtttcacaatagtacaaacacaacccttgaagaaat 10527809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 274 - 467
Target Start/End: Original strand, 10077527 - 10077720
Alignment:
Q  274 cccttcattgatggaaaacctggaatcagggtgattgtaacaatacgcaaacaaaaagttgcagaggtagcacacacatttcctattcataaattagaac 373  Q
    ||||||||||||||||| | ||||| || ||||||| |||||| |||| ||||||||||||||||||| |||| |||||||||||| |||| ||||||||    
T  10077527 cccttcattgatggaaagcatggaagcatggtgattataacaacacgccaacaaaaagttgcagaggtggcacgcacatttcctatacatatattagaac 10077626  T
Q  374 cactgtcaaatgaagattgttggtctttactctcaaagcatgcattaggaagtgatgagtttcgcaatagtaaaaacacaatccttgaagaaat 467  Q
    |  | ||||||||||||||||||| |||||| ||||||||||||||  ||  || |||||||| | |||||| |||| ||| ||||||||||||    
T  10077627 ctttatcaaatgaagattgttggtatttactttcaaagcatgcattgagagttggtgagtttcaccatagtacaaactcaacccttgaagaaat 10077720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 274 - 432
Target Start/End: Original strand, 10032261 - 10032419
Alignment:
Q  274 cccttcattgatggaaaacctggaatcagggtgattgtaacaatacgcaaacaaaaagttgcagaggtagcacacacatttcctattcataaattagaac 373  Q
    ||||||||||||||||||||||||| || ||||||| |||||| |||| ||| ||||||||| ||||| |||  |||||||||||| ||| || || |||    
T  10032261 cccttcattgatggaaaacctggaagcatggtgattataacaacacgccaacgaaaagttgctgaggtggcatgcacatttcctatacatgaactaaaac 10032360  T
Q  374 cactgtcaaatgaagattgttggtctttactctcaaagcatgcattaggaagtgatgag 432  Q
      || ||||||||||||||||||||||||||||||||||||||||| || |||||||||    
T  10032361 ttctatcaaatgaagattgttggtctttactctcaaagcatgcattgggcagtgatgag 10032419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 274 - 467
Target Start/End: Complemental strand, 10375656 - 10375463
Alignment:
Q  274 cccttcattgatggaaaacctggaatcagggtgattgtaacaatacgcaaacaaaaagttgcagaggtagcacacacatttcctattcataaattagaac 373  Q
    |||||||||||||||||||| |||| || ||||||| ||||||  ||| ||| |||||||||  ||||||||  |||||||||||| ||| || || |||    
T  10375656 cccttcattgatggaaaacccggaagcatggtgattataacaacgcgccaacgaaaagttgctaaggtagcatgcacatttcctatacatgaactaaaac 10375557  T
Q  374 cactgtcaaatgaagattgttggtctttactctcaaagcatgcattaggaagtgatgagtttcgcaatagtaaaaacacaatccttgaagaaat 467  Q
      || || |||||||| ||||||||||||||||||||||||||||| || ||||||||||||| | |||||  |||||||| ||||||||||||    
T  10375556 ttctatcgaatgaagactgttggtctttactctcaaagcatgcattgggtagtgatgagtttcaccatagttcaaacacaacccttgaagaaat 10375463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 274 - 467
Target Start/End: Original strand, 10580859 - 10581052
Alignment:
Q  274 cccttcattgatggaaaacctggaatcagggtgattgtaacaatacgcaaacaaaaagttgcagaggtagcacacacatttcctattcataaattagaac 373  Q
    ||||||||| ||||||||||||||| || ||||||| ||||||  ||| ||||||||||| || || | |||||||  ||| || | ||||| |||||||    
T  10580859 cccttcattaatggaaaacctggaagcatggtgattataacaacgcgccaacaaaaagttacaaagatggcacacatgtttgctgtacataatttagaac 10580958  T
Q  374 cactgtcaaatgaagattgttggtctttactctcaaagcatgcattaggaagtgatgagtttcgcaatagtaaaaacacaatccttgaagaaat 467  Q
    | || ||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||| | |||||| ||| |||  ||||||||||||    
T  10580959 ctctatcaaatgaagattgttggtctttactctcaaactatgcattgggaagtgatgagtttcaccatagtacaaatacagcccttgaagaaat 10581052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 274 - 432
Target Start/End: Original strand, 10127186 - 10127344
Alignment:
Q  274 cccttcattgatggaaaacctggaatcagggtgattgtaacaatacgcaaacaaaaagttgcagaggtagcacacacatttcctattcataaattagaac 373  Q
    ||||||||| ||||||||||||||| || ||||||| ||||||  ||| ||||||||||||| ||||| |||| |||||||||||| ||| || || ||     
T  10127186 cccttcattaatggaaaacctggaagcatggtgattataacaacgcgccaacaaaaagttgctgaggtggcacgcacatttcctatacatgaactaaaag 10127285  T
Q  374 cactgtcaaatgaagattgttggtctttactctcaaagcatgcattaggaagtgatgag 432  Q
     ||| ||| |||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  10127286 tactatcagatgaagattgttggtctttactatcaaagcatgcattgggaagtgatgag 10127344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 274 - 419
Target Start/End: Original strand, 10184500 - 10184645
Alignment:
Q  274 cccttcattgatggaaaacctggaatcagggtgattgtaacaatacgcaaacaaaaagttgcagaggtagcacacacatttcctattcataaattagaac 373  Q
    ||||||||||||||||||||||||| || ||||||| ||||||  ||| || ||||||| || ||||| ||||||||||||||||| ||| || || |||    
T  10184500 cccttcattgatggaaaacctggaagcatggtgattataacaacgcgccaagaaaaagtagctgaggtggcacacacatttcctatacatgaactaaaac 10184599  T
Q  374 cactgtcaaatgaagattgttggtctttactctcaaagcatgcatt 419  Q
      || |||||||||||||||||||| ||||||||||||||||||||    
T  10184600 ttctatcaaatgaagattgttggtcgttactctcaaagcatgcatt 10184645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 282 - 419
Target Start/End: Complemental strand, 11781785 - 11781648
Alignment:
Q  282 tgatggaaaacctggaatcagggtgattgtaacaatacgcaaacaaaaagttgcagaggtagcacacacatttcctattcataaattagaaccactgtca 381  Q
    |||||||||||||||||    ||||||| ||||||  ||| ||||||||||||||||||| |||||||||||||||||||||  ||||||||| || ||     
T  11781785 tgatggaaaacctggaagttcggtgattataacaactcgccaacaaaaagttgcagaggtggcacacacatttcctattcatgcattagaacctctatct 11781686  T
Q  382 aatgaagattgttggtctttactctcaaagcatgcatt 419  Q
     ||||||||||||||||||||||||| || ||||||||    
T  11781685 catgaagattgttggtctttactctcgaaacatgcatt 11781648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 303 - 419
Target Start/End: Original strand, 10517772 - 10517888
Alignment:
Q  303 ggtgattgtaacaatacgcaaacaaaaagttgcagaggtagcacacacatttcctattcataaattagaaccactgtcaaatgaagattgttggtcttta 402  Q
    ||||||| ||||||  ||| ||||||||||||||||||| ||||||||||||||||||||  |||||||||| || ||  ||||||||||||||||||||    
T  10517772 ggtgattataacaacgcgccaacaaaaagttgcagaggtggcacacacatttcctattcaggaattagaacctctatctcatgaagattgttggtcttta 10517871  T
Q  403 ctctcaaagcatgcatt 419  Q
    |||||||| ||||||||    
T  10517872 ctctcaaaacatgcatt 10517888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 274 - 432
Target Start/End: Original strand, 10260956 - 10261114
Alignment:
Q  274 cccttcattgatggaaaacctggaatcagggtgattgtaacaatacgcaaacaaaaagttgcagaggtagcacacacatttcctattcataaattagaac 373  Q
    |||||| |||||||||||||||||| || ||||||| ||||||  ||  ||||||||||||| ||||| |||  |||||||||||| ||| || || |||    
T  10260956 cccttcgttgatggaaaacctggaagcatggtgattataacaacgcggcaacaaaaagttgctgaggtggcatgcacatttcctatacatgaactaaaac 10261055  T
Q  374 cactgtcaaatgaagattgttggtctttactctcaaagcatgcattaggaagtgatgag 432  Q
      || || |||||||| ||||||||||||||||||||||||||||| || |||||||||    
T  10261056 ttctatcgaatgaagactgttggtctttactctcaaagcatgcattgggcagtgatgag 10261114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 294 - 428
Target Start/End: Original strand, 8861564 - 8861698
Alignment:
Q  294 tggaatcagggtgattgtaacaatacgcaaacaaaaagttgcagaggtagcacacacatttcctattcataaattagaaccactgtcaaatgaagattgt 393  Q
    ||||| |||||| || || |||| |||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||    | || |||||||||       
T  8861564 tggaagcagggtcatcgtcacaacacgccaacaaaaagttgcagaggttgcacatacatttcctattcataaattagaagttttatctaatgaagataca 8861663  T
Q  394 tggtctttactctcaaagcatgcattaggaagtga 428  Q
    |||||||||||||||||||||||||| ||||||||    
T  8861664 tggtctttactctcaaagcatgcatttggaagtga 8861698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 294 - 428
Target Start/End: Complemental strand, 11130817 - 11130683
Alignment:
Q  294 tggaatcagggtgattgtaacaatacgcaaacaaaaagttgcagaggtagcacacacatttcctattcataaattagaaccactgtcaaatgaagattgt 393  Q
    ||||| |||||| || || |||| |||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||    | || |||||||||       
T  11130817 tggaagcagggtcatcgtcacaacacgccaacaaaaagttgcagaggttgcacatacatttcctattcataaattagaagttttatctaatgaagataca 11130718  T
Q  394 tggtctttactctcaaagcatgcattaggaagtga 428  Q
    |||||||||||||||||||||||||| ||||||||    
T  11130717 tggtctttactctcaaagcatgcatttggaagtga 11130683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 294 - 428
Target Start/End: Complemental strand, 11148645 - 11148511
Alignment:
Q  294 tggaatcagggtgattgtaacaatacgcaaacaaaaagttgcagaggtagcacacacatttcctattcataaattagaaccactgtcaaatgaagattgt 393  Q
    ||||| |||||| || || |||| |||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||    | || |||||||||       
T  11148645 tggaagcagggtcatcgtcacaacacgccaacaaaaagttgcagaggttgcacatacatttcctattcataaattagaagttttatctaatgaagataca 11148546  T
Q  394 tggtctttactctcaaagcatgcattaggaagtga 428  Q
    |||||||||||||||||||||||||| ||||||||    
T  11148545 tggtctttactctcaaagcatgcatttggaagtga 11148511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 294 - 428
Target Start/End: Complemental strand, 11159808 - 11159674
Alignment:
Q  294 tggaatcagggtgattgtaacaatacgcaaacaaaaagttgcagaggtagcacacacatttcctattcataaattagaaccactgtcaaatgaagattgt 393  Q
    ||||| |||||| || || |||| |||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||    | || |||||||||       
T  11159808 tggaagcagggtcatcgtcacaacacgccaacaaaaagttgcagaggttgcacatacatttcctattcataaattagaagttttatctaatgaagataca 11159709  T
Q  394 tggtctttactctcaaagcatgcattaggaagtga 428  Q
    |||||||||||||||||||||||||| ||||||||    
T  11159708 tggtctttactctcaaagcatgcatttggaagtga 11159674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 311 - 419
Target Start/End: Original strand, 10500869 - 10500977
Alignment:
Q  311 taacaatacgcaaacaaaaagttgcagaggtagcacacacatttcctattcataaattagaaccactgtcaaatgaagattgttggtctttactctcaaa 410  Q
    |||||| |||| ||||||||||||||||||| |||  ||||||||||||||||||||||||||| || ||  |||| ||||||||| |||||||||| ||    
T  10500869 taacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatctgatgatgattgttggactttactctcgaa 10500968  T
Q  411 gcatgcatt 419  Q
    |||||||||    
T  10500969 gcatgcatt 10500977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 313 - 428
Target Start/End: Original strand, 13161277 - 13161392
Alignment:
Q  313 acaatacgcaaacaaaaagttgcagaggtagcacacacatttcctattcataaattagaaccactgtcaaatgaagattgttggtctttactctcaaagc 412  Q
    |||| |||| ||||||||||||| ||||| |||||||| ||||||||||| ||| |||| || || ||| |||| || |||||||| ||||| |||||||    
T  13161277 acaacacgccaacaaaaagttgcggaggttgcacacacgtttcctattcacaaagtagatcctctatcagatgatgactgttggtcgttactttcaaagc 13161376  T
Q  413 atgcattaggaagtga 428  Q
    ||||||| ||||||||    
T  13161377 atgcatttggaagtga 13161392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 313 - 428
Target Start/End: Original strand, 13171328 - 13171443
Alignment:
Q  313 acaatacgcaaacaaaaagttgcagaggtagcacacacatttcctattcataaattagaaccactgtcaaatgaagattgttggtctttactctcaaagc 412  Q
    |||| |||| ||||||||||||| ||||| |||||||| ||||||||||| ||| |||| || || ||| |||| || |||||||| ||||| |||||||    
T  13171328 acaacacgccaacaaaaagttgcggaggttgcacacacgtttcctattcacaaagtagatcctctatcagatgatgactgttggtcgttactttcaaagc 13171427  T
Q  413 atgcattaggaagtga 428  Q
    ||||||| ||||||||    
T  13171428 atgcattcggaagtga 13171443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 313 - 428
Target Start/End: Original strand, 13289962 - 13290077
Alignment:
Q  313 acaatacgcaaacaaaaagttgcagaggtagcacacacatttcctattcataaattagaaccactgtcaaatgaagattgttggtctttactctcaaagc 412  Q
    |||| |||| ||||||||||||| ||||| |||||||| ||||||||||| ||| |||| || || ||| |||| || |||||||| ||||| |||||||    
T  13289962 acaacacgccaacaaaaagttgcggaggttgcacacacgtttcctattcacaaagtagatcctctatcagatgatgactgttggtcgttactttcaaagc 13290061  T
Q  413 atgcattaggaagtga 428  Q
    ||||||| ||||||||    
T  13290062 atgcatttggaagtga 13290077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 313 - 428
Target Start/End: Original strand, 13333201 - 13333316
Alignment:
Q  313 acaatacgcaaacaaaaagttgcagaggtagcacacacatttcctattcataaattagaaccactgtcaaatgaagattgttggtctttactctcaaagc 412  Q
    |||| |||| ||||||||||||| ||||| |||||||| ||||||||||| ||| |||| || || ||| |||| || |||||||| ||||| |||||||    
T  13333201 acaacacgccaacaaaaagttgcggaggttgcacacacgtttcctattcacaaagtagatcctctatcagatgatgactgttggtcgttactttcaaagc 13333300  T
Q  413 atgcattaggaagtga 428  Q
    ||||||| ||||||||    
T  13333301 atgcattcggaagtga 13333316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 313 - 428
Target Start/End: Original strand, 13344386 - 13344501
Alignment:
Q  313 acaatacgcaaacaaaaagttgcagaggtagcacacacatttcctattcataaattagaaccactgtcaaatgaagattgttggtctttactctcaaagc 412  Q
    |||| |||| ||||||||||||| ||||| |||||||| ||||||||||| ||| |||| || || ||| |||| || |||||||| ||||| |||||||    
T  13344386 acaacacgccaacaaaaagttgcggaggttgcacacacgtttcctattcacaaagtagatcctctatcagatgatgactgttggtcgttactttcaaagc 13344485  T
Q  413 atgcattaggaagtga 428  Q
    ||||||| ||||||||    
T  13344486 atgcattcggaagtga 13344501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 325 - 428
Target Start/End: Original strand, 10889615 - 10889718
Alignment:
Q  325 caaaaagttgcagaggtagcacacacatttcctattcataaattagaaccactgtcaaatgaagattgttggtctttactctcaaagcatgcattaggaa 424  Q
    ||||||||||||||||| |||||||| | ||||||||| |||||||||    | || |||||||||   |||||||||||||||||||||||||| ||||    
T  10889615 caaaaagttgcagaggttgcacacacgtatcctattcacaaattagaagttttatctaatgaagatacatggtctttactctcaaagcatgcatttggaa 10889714  T
Q  425 gtga 428  Q
    ||||    
T  10889715 gtga 10889718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 106; Significance: 7e-53; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 274 - 467
Target Start/End: Original strand, 26907155 - 26907348
Alignment:
Q  274 cccttcattgatggaaaacctggaatcagggtgattgtaacaatacgcaaacaaaaagttgcagaggtagcacacacatttcctattcataaattagaac 373  Q
    ||||||||| ||||||||||||||| || ||||||| ||||||  ||| ||||||||||||||||||| ||||| ||||||||||| |||||||||||||    
T  26907155 cccttcattcatggaaaacctggaagcatggtgattataacaacgcgccaacaaaaagttgcagaggtggcacatacatttcctatacataaattagaac 26907254  T
Q  374 cactgtcaaatgaagattgttggtctttactctcaaagcatgcattaggaagtgatgagtttcgcaatagtaaaaacacaatccttgaagaaat 467  Q
    | || |||| |||||||||||||||||||||||||||||||||||| |||||| | ||||||| | ||||||  ||||||| ||| ||||||||    
T  26907255 ctctatcaactgaagattgttggtctttactctcaaagcatgcattgggaagtaaagagtttcaccatagtattaacacaaccctcgaagaaat 26907348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 9e-31; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 323 - 419
Target Start/End: Complemental strand, 44957450 - 44957354
Alignment:
Q  323 aacaaaaagttgcagaggtagcacacacatttcctattcataaattagaaccactgtcaaatgaagattgttggtctttactctcaaagcatgcatt 419  Q
    ||||||| ||||||||||| |||||||||||||| ||||||||||||||||| || ||  |||||||||||||||||||||||||||||||||||||    
T  44957450 aacaaaacgttgcagaggttgcacacacatttccgattcataaattagaacctctatctgatgaagattgttggtctttactctcaaagcatgcatt 44957354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 274 - 419
Target Start/End: Original strand, 11485296 - 11485441
Alignment:
Q  274 cccttcattgatggaaaacctggaatcagggtgattgtaacaatacgcaaacaaaaagttgcagaggtagcacacacatttcctattcataaattagaac 373  Q
    ||||| ||| ||||| || ||| || || ||||||  |||||| |||| || | |||||||||||||| |||  | ||||||||||||||||||||||||    
T  11485296 cccttgattaatggagaaactgtaagcaaggtgatcataacaacacgcgaagagaaagttgcagaggtcgcatgcgcatttcctattcataaattagaac 11485395  T
Q  374 cactgtcaaatgaagattgttggtctttactctcaaagcatgcatt 419  Q
    | || ||  ||||||||||||||||||||||||| |||||||||||    
T  11485396 ctctatctgatgaagattgttggtctttactctcgaagcatgcatt 11485441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 274 - 428
Target Start/End: Complemental strand, 31679544 - 31679390
Alignment:
Q  274 cccttcattgatggaaaacctggaatcagggtgattgtaacaatacgcaaacaaaaagttgcagaggtagcacacacatttcctattcataaattagaac 373  Q
    ||||||||||||||| || ||||||  ||||||||| | |||| |||  || |||||||||| ||| |  | || || ||||||||  ||||||||||||    
T  31679544 cccttcattgatggagaatctggaagtagggtgattatcacaacacgtcaataaaaagttgccgagttcacccatacctttcctatctataaattagaac 31679445  T
Q  374 cactgtcaaatgaagattgttggtctttactctcaaagcatgcattaggaagtga 428  Q
    | || ||| |||| ||||| |||||||||||||||||||||||||| ||||||||    
T  31679444 ctctatcagatgatgattgctggtctttactctcaaagcatgcatttggaagtga 31679390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 326 - 428
Target Start/End: Complemental strand, 17852682 - 17852580
Alignment:
Q  326 aaaaagttgcagaggtagcacacacatttcctattcataaattagaaccactgtcaaatgaagattgttggtctttactctcaaagcatgcattaggaag 425  Q
    |||||||||| ||||| |||| ||||||||| |||||||||||||||||  | ||  ||||||||||||||||||| ||||||||||||||||| ||| |    
T  17852682 aaaaagttgcggaggttgcacgcacatttccaattcataaattagaacctatatccgatgaagattgttggtctttgctctcaaagcatgcatttggagg 17852583  T
Q  426 tga 428  Q
    |||    
T  17852582 tga 17852580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 379 - 467
Target Start/End: Complemental strand, 58126 - 58038
Alignment:
Q  379 tcaaatgaagattgttggtctttactctcaaagcatgcattaggaagtgatgagtttcgcaatagtaaaaacacaatccttgaagaaat 467  Q
    ||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||| | |||||| ||| |||  ||||||||||||    
T  58126 tcaaatgaagattgttggtctttactctcaaactatgcattgggaagtgatgagtttcaccatagtacaaatacagcccttgaagaaat 58038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 313 - 428
Target Start/End: Complemental strand, 135660 - 135545
Alignment:
Q  313 acaatacgcaaacaaaaagttgcagaggtagcacacacatttcctattcataaattagaaccactgtcaaatgaagattgttggtctttactctcaaagc 412  Q
    |||| |||| ||||||||||||| ||||| |||||||| ||||||||||| ||| |||| || || ||| |||| || |||||||| ||||| |||||||    
T  135660 acaacacgccaacaaaaagttgcggaggttgcacacacgtttcctattcacaaagtagatcctctatcagatgatgactgttggtcgttactttcaaagc 135561  T
Q  413 atgcattaggaagtga 428  Q
    ||||||| ||||||||    
T  135560 atgcattcggaagtga 135545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 313 - 428
Target Start/End: Complemental strand, 145711 - 145596
Alignment:
Q  313 acaatacgcaaacaaaaagttgcagaggtagcacacacatttcctattcataaattagaaccactgtcaaatgaagattgttggtctttactctcaaagc 412  Q
    |||| |||| ||||||||||||| ||||| |||||||| ||||||||||| ||| |||| || || ||| |||| || |||||||| ||||| |||||||    
T  145711 acaacacgccaacaaaaagttgcggaggttgcacacacgtttcctattcacaaagtagatcctctatcagatgatgactgttggtcgttactttcaaagc 145612  T
Q  413 atgcattaggaagtga 428  Q
    ||||||| ||||||||    
T  145611 atgcattcggaagtga 145596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 313 - 428
Target Start/End: Complemental strand, 154016 - 153901
Alignment:
Q  313 acaatacgcaaacaaaaagttgcagaggtagcacacacatttcctattcataaattagaaccactgtcaaatgaagattgttggtctttactctcaaagc 412  Q
    |||| |||| ||||||||||||| ||||| |||||||| ||||||||||| ||| |||| || || ||| |||| || |||||||| ||||| |||||||    
T  154016 acaacacgccaacaaaaagttgcggaggttgcacacacgtttcctattcacaaagtagatcctctatcagatgatgactgttggtcgttactttcaaagc 153917  T
Q  413 atgcattaggaagtga 428  Q
    ||||||| ||||||||    
T  153916 atgcattcggaagtga 153901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 330 - 427
Target Start/End: Original strand, 826225 - 826322
Alignment:
Q  330 agttgcagaggtagcacacacatttcctattcataaattagaaccactgtcaaatgaagattgttggtctttactctcaaagcatgcattaggaagtg 427  Q
    |||||||||||| ||||| || | ||||||||||||||| ||||| || ||  | ||| ||||||||||||||||||| ||| ||||||| |||||||    
T  826225 agttgcagaggttgcacatacgtatcctattcataaattggaacctctatcggacgaacattgttggtctttactctccaagtatgcatttggaagtg 826322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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