View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4716_high_10 (Length: 337)
Name: NF4716_high_10
Description: NF4716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4716_high_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 45715178 - 45715498
Alignment:
| Q |
1 |
attcccaagctcaggtggaatcacacctgaaaaccggtttgccgaaagcaaaagagaatcaatattactccacttcccaagccaagaaggcaaaggacca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45715178 |
attcccaagctcaggtggaatcacacctgaaaaccggtttgccgaaagcaaaagagaatcaatattactccacttcccaagccaagaaggcaaaggacca |
45715277 |
T |
|
| Q |
101 |
tgaagaagattcttttcagctgaaaatgtcttaataggaagcatagaaagctcttgaggcaatgacccagataatgaattaaaggaaagcatcacattag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
45715278 |
tgaagaagattcttttcagctgaaaatgtcttaataggaagcatagaaagctcttgaggcaatgacccagataatgaattaaaagaaagcatcacattag |
45715377 |
T |
|
| Q |
201 |
tcaaatttgaacaatttccaagctcggatggaactgacccattaagctcagaaaaaacaaggttcaaaatttccaaatttttcaacttcccaataaactt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45715378 |
tcaaatttgaacaatttccaagctcggatggaactgacccattaagctcagaaaaaacaaggttcaaaatttccaaatttttcaacttcccaataaactt |
45715477 |
T |
|
| Q |
301 |
tggaatagaacaccttaaagg |
321 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
45715478 |
tggaatagaacaccttaaagg |
45715498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University