View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4716_high_11 (Length: 328)
Name: NF4716_high_11
Description: NF4716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4716_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 305; Significance: 1e-172; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 40761419 - 40761727
Alignment:
| Q |
1 |
ttggcttctaaaacacatctactacataacatgcccccaaagaacataacttatttatcatcatctaatgtttgttcattaacaaattaatgaatgaaat |
100 |
Q |
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| T |
40761419 |
ttggcttctaaaacacatctactacataacatgcccccaaagaacataacttatttatcatcatctaatgtttgttcattaacaaattaatgaatgaaat |
40761518 |
T |
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| Q |
101 |
atgtgatagcataattgcaggataaccctcccaaatgatataattccaccagaaccaaccacccaatcaaaatgtgggatatgtttaaggcaaatcatcc |
200 |
Q |
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| T |
40761519 |
atgtgatagcataattgcaggataaccctcccaaatgatataattccaccagaaccaaccacccaatcaaaatgtgggatatgtttaaggcaaatcaacc |
40761618 |
T |
|
| Q |
201 |
atatattctgaaagatatcatacaaagatgcaaccttgttgagttactactccttcaactactacacctcttgtgtaacagcaggatcttgttcttcctt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40761619 |
atatattctgaaagatatcatacaaagatgcaaccttgttgagttactactccttcaactactacacctcttgtgtaacagcaggatcttgttcttcctt |
40761718 |
T |
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| Q |
301 |
tgtctctgt |
309 |
Q |
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| T |
40761719 |
tgtctctgt |
40761727 |
T |
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