View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4716_high_13 (Length: 313)
Name: NF4716_high_13
Description: NF4716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4716_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 16 - 299
Target Start/End: Complemental strand, 28064593 - 28064311
Alignment:
| Q |
16 |
catcctctcttttgcaactctagtcgcaacgcctgtcatatagtcaaaaatctcgattgttagatcacgatcatatgatttatattttaatatatatgtt |
115 |
Q |
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| T |
28064593 |
catcctctcttttgcaactctagtcgcaacgcctgtcacatagtcaaaaatctcgattgttagatcacgatcatatgatttatattttaatatatatgtt |
28064494 |
T |
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| Q |
116 |
aaagttgatttaatgaaattaaaatacaaatagtcagatcttatccaacgatcgaggatcactacatagctacaactatgtacttaggctatagacaatc |
215 |
Q |
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||||||||||||||||||||||||||| | ||||| |||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
28064493 |
aaagttgatttaatgaaattaaaatacgagtagtctgatcttttccaacgattgaggatcactacatagctacaac-atgtacttaggctatagacaatc |
28064395 |
T |
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| Q |
216 |
ttgatcagtagacacacacataagtcacaatgagattgtaccttgatccttcttctattcacatcaaaatcaaaattcccaacc |
299 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
28064394 |
ttgatctgtagacacacacataagtcacaatgagattgtaccttgattcttcttctattcacatcaaaatcaaaattcccaacc |
28064311 |
T |
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