View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4716_high_14 (Length: 309)
Name: NF4716_high_14
Description: NF4716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4716_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 304
Target Start/End: Original strand, 32704027 - 32704313
Alignment:
| Q |
18 |
caaataatctaaaaatcctctgaattgtcttcaaatgcttattgaaaatgacctacaaacatgtctaaacatcatacaatgaggtattaccaatcctctt |
117 |
Q |
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| T |
32704027 |
caaataatctaaaaatcctatgaattgtcttcaaatgcttattaaaaatgacctacaaacatatctaaacatcatacgatgaggtgttaccgatcctctt |
32704126 |
T |
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| Q |
118 |
ggtattatggtcaatcatcatactcctcgtcacccactttaggaagtcaactgatgcaactatattttcgtaatcgactatctctggacaagttggaaaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| | |
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| T |
32704127 |
ggtattatggtcaatcatcatactcctcgtcacccactttaggaagtcaactgatgcaactatatttttgtactcgactatctctggacaagttggaata |
32704226 |
T |
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| Q |
218 |
ttagagacattttcac-tattagttatgggtcat-atcacatagcattggtgtgtattaataatatttgtatggacatcctatgtttct |
304 |
Q |
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|||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||| |
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| T |
32704227 |
ttagagacattttcacttattagttatgggtcatgatcacatagcattg--gtgtattaataatatttgtatggacatccattgtttct |
32704313 |
T |
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