View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4716_high_15 (Length: 307)
Name: NF4716_high_15
Description: NF4716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4716_high_15 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 13 - 291
Target Start/End: Complemental strand, 53115538 - 53115260
Alignment:
| Q |
13 |
tgagatgtgaagttggggagaagggatttggtgtatcctttgtcctttttctttctattaatagtggtctcttttcttattgcaacgtaattgtcttgta |
112 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53115538 |
tgagatgtaaagttggggagaagggatttggtgtatcctttgtcctttttctttctattaatagtggtctcttttcttattgcaacgtaattgtcttgta |
53115439 |
T |
|
| Q |
113 |
taggaaacaagacatcgtttacgccccttggatttgatattgaattcagatattcgagaaatattccacactagaaatagaatcatttcttacatccaga |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53115438 |
taggaaacaagacatcgtttacgccccttggatttgatattgaattcagatattcgagaaatattccacactagaaatagaatcatttcttacatccaga |
53115339 |
T |
|
| Q |
213 |
ggcaccttgatgaccttgattttatgaaggtttcttctctgtccaagtattctgatgccagttgcttatactatcttcc |
291 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53115338 |
ggcaccttgatgaccttgattttatggaggtttgttctctgtccaagtattctgatgccagttgcttatactatcttcc |
53115260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 66 - 291
Target Start/End: Complemental strand, 53110060 - 53109838
Alignment:
| Q |
66 |
tctattaatagtggtctcttttcttattgcaacgtaattgtcttgtataggaaacaagacatcgtttacgccccttggatttgatattgaattcagatat |
165 |
Q |
| |
|
|||||||| ||| |||| || |||||||||||||||||| |||| |||||||||||||| ||||||||||| ||||||||||||||||||||||| || |
|
|
| T |
53110060 |
tctattaacagtagtcttttctcttattgcaacgtaattatctt-tataggaaacaagatatcgtttacgctttttggatttgatattgaattcagaaat |
53109962 |
T |
|
| Q |
166 |
tcgagaaatattccacactagaaatagaatcatttcttacatccagaggcaccttgatgaccttgattttatgaaggtttcttctctgtccaagtattct |
265 |
Q |
| |
|
||||||||||||| | ||||||| || |||||||||||||||| || |||||||| ||||||||| ||| |||||| | ||||||||| |||||| |
|
|
| T |
53109961 |
tcgagaaatattcaaaactagaagtaatatcatttcttacatccgaagattccttgatggccttgatttcatggaggtttgt--tctgtccaaatattct |
53109864 |
T |
|
| Q |
266 |
gatgccagttgcttatactatcttcc |
291 |
Q |
| |
|
||||||||||||||||| |||||||| |
|
|
| T |
53109863 |
gatgccagttgcttataatatcttcc |
53109838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 66 - 267
Target Start/End: Complemental strand, 53127904 - 53127704
Alignment:
| Q |
66 |
tctattaatagtggtctcttttcttattgcaacgtaattgtcttgtataggaaacaagacatcgtttacgccccttggatttgatattgaattcagatat |
165 |
Q |
| |
|
|||||||| ||| |||| |||||||||| |||| | ||| |||| |||||||||||||| |||||| ||||| ||||||||||| ||| || | || | |
|
|
| T |
53127904 |
tctattaacagtagtcttttttcttattacaac-tcattatcttttataggaaacaagatatcgttcacgccatttggatttgatgttgcatcctgaagt |
53127806 |
T |
|
| Q |
166 |
tcgagaaatattccacactagaaatagaatcatttcttacatccagaggcaccttgatgaccttgattttatgaaggtttcttctctgtccaagtattct |
265 |
Q |
| |
|
||||||||||||| | |||||| || |||| || ||||| | || |||||||||||| |||||| || |||||| ||||||||||||||||||| |
|
|
| T |
53127805 |
tcgagaaatattcaaaactagatgtaaaatcgttaaatacattcggaaataccttgatgaccgtgatttcttggaggtttgttctctgtccaagtattct |
53127706 |
T |
|
| Q |
266 |
ga |
267 |
Q |
| |
|
|| |
|
|
| T |
53127705 |
ga |
53127704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 53118684 - 53118621
Alignment:
| Q |
12 |
atgagatgtgaagttggggagaagggatttggtgtatcctttgtcctttttctttctattaata |
75 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| |||||| | ||||||| |||||| |||| |
|
|
| T |
53118684 |
atgagatgtgaagttggggagaagggattttatgtttcctttattctttttcattctataaata |
53118621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University