View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4716_high_19 (Length: 250)
Name: NF4716_high_19
Description: NF4716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4716_high_19 |
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| [»] chr4 (3 HSPs) |
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| [»] scaffold0421 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 4e-90; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 15 - 250
Target Start/End: Complemental strand, 30033425 - 30033191
Alignment:
| Q |
15 |
gaaacacaattaattatgtttttactacggagaatgctagcaaatttctcttttaaacactatatctaatactcactcttttattagatgctctctcaaa |
114 |
Q |
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| T |
30033425 |
gaaacacaattaattatgtttttattacggagaatgctagcaaatttttcttttaaacactatctctaatactcactcttttattagatgctctctcaaa |
30033326 |
T |
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| Q |
115 |
cacttactcttttcaacattcttttattgcctaannnnnnnnnnnngagggatattgcctaaaatatttgtttcaagtaacatacctccataaattatgg |
214 |
Q |
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| T |
30033325 |
cacttactcttttcaacattcttttattgcctaattttttttttttgagggatattgcctaaaatatttgtttcaagtaacatacctctataaattatgg |
30033226 |
T |
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| Q |
215 |
tgccaccttagactttatgtagataagtgtctaatt |
250 |
Q |
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| T |
30033225 |
tgcca-cttagactttatgtagccaagtgtctaatt |
30033191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 248
Target Start/End: Complemental strand, 30049372 - 30049310
Alignment:
| Q |
186 |
ttcaagtaacatacctccataaattatggtgccaccttagactttatgtagataagtgtctaa |
248 |
Q |
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| T |
30049372 |
ttcaagtaccatacttgtataaattatggtgccaccttatgctttatgtagcaaagtgtctaa |
30049310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 248
Target Start/End: Complemental strand, 30063695 - 30063651
Alignment:
| Q |
204 |
ataaattatggtgccaccttagactttatgtagataagtgtctaa |
248 |
Q |
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| T |
30063695 |
ataaattatggtgccaccttatgctttatgtagcaaagtgtctaa |
30063651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0421 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0421
Description:
Target: scaffold0421; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 236
Target Start/End: Original strand, 13680 - 13712
Alignment:
| Q |
204 |
ataaattatggtgccaccttagactttatgtag |
236 |
Q |
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| T |
13680 |
ataaattatggtgccactttagactttatgtag |
13712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 99
Target Start/End: Original strand, 26767760 - 26767812
Alignment:
| Q |
47 |
aatgctagcaaatttctcttttaaacactatatctaatactcactcttttatt |
99 |
Q |
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| T |
26767760 |
aatgctagcaacactttcttttgaacactctatctaatactcactcttttatt |
26767812 |
T |
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