View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4716_high_23 (Length: 237)
Name: NF4716_high_23
Description: NF4716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4716_high_23 |
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Alignment Details
Target: chr6 (Bit Score: 81; Significance: 3e-38; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 111 - 195
Target Start/End: Complemental strand, 14044853 - 14044769
Alignment:
| Q |
111 |
aaatgtatttgtctaacggaatttcagcacatgactgctggaattaaaatgtatttatgttcacatttcaataaaaatttatcta |
195 |
Q |
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| T |
14044853 |
aaatgtatttgtctaacgaaatttcagcacatgactgctggaattaaaatgtatttatgttcacatttcaataaaaatttatcta |
14044769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 102 - 181
Target Start/End: Complemental strand, 14020607 - 14020524
Alignment:
| Q |
102 |
gagctcaaaaaatgtatttgtctaacggaatttcagcacatgactgctgg----aattaaaatgtatttatgttcacatttcaa |
181 |
Q |
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| T |
14020607 |
gagctcaaaaaatgtatttgtctaacggaatttcagcacatgaccggtggaattaattaaaatgtatttatgttcacatttcaa |
14020524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 14044922 - 14044861
Alignment:
| Q |
1 |
ccgtacccattgtctgccttttctccattcagttatgttccagctagttctccatcatccgt |
62 |
Q |
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| T |
14044922 |
ccgtagccattgtctgccttttctccattcagttatgttccagctagttctccatcatccgt |
14044861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 36 - 95
Target Start/End: Complemental strand, 14020708 - 14020649
Alignment:
| Q |
36 |
tgttccagctagttctccatcatccgtgttctaaaagaacacttagttcagttgtcatat |
95 |
Q |
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| T |
14020708 |
tgttccagctagttctccatcatccgtaacctaaaagaacacttagttcatttctcatat |
14020649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 137
Target Start/End: Original strand, 13475564 - 13475594
Alignment:
| Q |
107 |
caaaaaatgtatttgtctaacggaatttcag |
137 |
Q |
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| T |
13475564 |
caaaaaatgtatttgtctaacggaatttcag |
13475594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 195
Target Start/End: Complemental strand, 14044720 - 14044691
Alignment:
| Q |
166 |
tatgttcacatttcaataaaaatttatcta |
195 |
Q |
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| T |
14044720 |
tatgttcacatttcaataaaaatttatcta |
14044691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 107 - 159
Target Start/End: Original strand, 10507760 - 10507812
Alignment:
| Q |
107 |
caaaaaatgtatttgtctaacggaatttcagcacatgactgctggaattaaaa |
159 |
Q |
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| T |
10507760 |
caaaaaatgtatttgtctatctgaatttcagcacatgacaggtggaattaaaa |
10507812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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