View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4716_high_24 (Length: 236)
Name: NF4716_high_24
Description: NF4716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4716_high_24 |
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| [»] chr4 (5 HSPs) |
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| [»] scaffold0421 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 174; Significance: 9e-94; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 15 - 236
Target Start/End: Original strand, 30032886 - 30033103
Alignment:
| Q |
15 |
attattcactttgaaaaa-ggtgaattttaactgatgatagactacttataaaagaatacataagagagatatagaacgtaaccataattgaggagaagc |
113 |
Q |
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|||||||||||| ||||| ||||||||||||| || | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
30032886 |
attattcactttaaaaaaaggtgaattttaaccaataa---actacttataaaagaatacataagag--atatagaacgtaaccataattgaggagaagc |
30032980 |
T |
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| Q |
114 |
gtgggttgatagggatgaagacatctttgagcaaaggtataaccagtgagttatcaaatggaatagcaaactccagaaagccaaaaacatatgaacatat |
213 |
Q |
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| T |
30032981 |
gtgggttgatagggatgaagacatctttgagcaaaggtataaccagtgagttatcaaatggaatagcaaactccagaaagccaaaaacatatgaacatat |
30033080 |
T |
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| Q |
214 |
gacagagctgttgaaatattgtc |
236 |
Q |
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| T |
30033081 |
gacagagctgttgaaatattgtc |
30033103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 79 - 234
Target Start/End: Original strand, 30049046 - 30049201
Alignment:
| Q |
79 |
agagatatagaacgtaaccataattgaggagaagcgtgggttgatagggatgaagacatctttgagcaaaggtataaccagtgagttatcaaatggaata |
178 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||| ||||||||||||||| |
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| T |
30049046 |
agagatatagaatgtaaccataattgaggagaagcgtgggttgatagggatgaagacatctttgagcaaaggtatagctaatgaattatcaaatggaata |
30049145 |
T |
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| Q |
179 |
gcaaactccagaaagccaaaaacatatgaacatatgacagagctgttgaaatattg |
234 |
Q |
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| T |
30049146 |
gctaattccaaaaaggcaaaaacatatgaacatatcacagagctgttgaagtattg |
30049201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 79 - 234
Target Start/End: Original strand, 30063387 - 30063542
Alignment:
| Q |
79 |
agagatatagaacgtaaccataattgaggagaagcgtgggttgatagggatgaagacatctttgagcaaaggtataaccagtgagttatcaaatggaata |
178 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||| ||||||||||||||| |
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| T |
30063387 |
agagatatagaatgtaaccataattgaggagaagcgtgggttgatagggatgaagacatctttgagcaaaggtatagctaatgaattatcaaatggaata |
30063486 |
T |
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| Q |
179 |
gcaaactccagaaagccaaaaacatatgaacatatgacagagctgttgaaatattg |
234 |
Q |
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| T |
30063487 |
gctaattccaaaaaggcaaaaacatatgaacatatcacagagctgttgaagtattg |
30063542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 94 - 236
Target Start/End: Original strand, 30229172 - 30229314
Alignment:
| Q |
94 |
aaccataattgaggagaagcgtgggttgatagggatgaagacatctttgagcaaaggtataaccagtgagttatcaaatggaatagcaaactccagaaag |
193 |
Q |
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|||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||| | | ||| |||||||||||||| || || ||||||||| |
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| T |
30229172 |
aaccatgatagaggagaagcgtgggttgatagggatgaaaacatctttgagcaaaggtatagctaatgaattatcaaatggaatcgctaattccagaaag |
30229271 |
T |
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| Q |
194 |
ccaaaaacatatgaacatatgacagagctgttgaaatattgtc |
236 |
Q |
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| T |
30229272 |
ccaaaaacatatgaacacatcacagagctgttgaaatattgtc |
30229314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 94 - 236
Target Start/End: Complemental strand, 30219903 - 30219761
Alignment:
| Q |
94 |
aaccataattgaggagaagcgtgggttgatagggatgaagacatctttgagcaaaggtataaccagtgagttatcaaatggaatagcaaactccagaaag |
193 |
Q |
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||||||||| |||||||| ||||| |||||||| | |||||||||||| |||||||| ||| |||||| ||||| ||||||||| || |||||||| |
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| T |
30219903 |
aaccataatagaggagaaacgtggattgataggaaggaagacatctttaagcaaaggcatagtttgtgagtcatcaattggaatagctaattccagaaac |
30219804 |
T |
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| Q |
194 |
ccaaaaacatatgaacatatgacagagctgttgaaatattgtc |
236 |
Q |
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| T |
30219803 |
ccaaaaacatatgaacatatcacagagctattgaaatattgtc |
30219761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0421 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0421
Description:
Target: scaffold0421; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 176 - 236
Target Start/End: Complemental strand, 13833 - 13773
Alignment:
| Q |
176 |
atagcaaactccagaaagccaaaaacatatgaacatatgacagagctgttgaaatattgtc |
236 |
Q |
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| T |
13833 |
atagctaattccagaaagccaaaaacaaatgcacatattacagagctgttgaaatattgtc |
13773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 43
Target Start/End: Complemental strand, 41405110 - 41405082
Alignment:
| Q |
15 |
attattcactttgaaaaaggtgaatttta |
43 |
Q |
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| T |
41405110 |
attattcactttgaaaaaggtgaatttta |
41405082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 44
Target Start/End: Original strand, 24889214 - 24889242
Alignment:
| Q |
16 |
ttattcactttgaaaaaggtgaattttaa |
44 |
Q |
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| T |
24889214 |
ttattcactttgaaaaaggtgaattttaa |
24889242 |
T |
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