View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4716_high_3 (Length: 505)

Name: NF4716_high_3
Description: NF4716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4716_high_3
NF4716_high_3
[»] chr3 (2 HSPs)
chr3 (9-488)||(38286690-38287167)
chr3 (47-132)||(18758001-18758085)
[»] chr8 (4 HSPs)
chr8 (9-491)||(28160384-28160874)
chr8 (47-129)||(25760237-25760318)
chr8 (49-132)||(3735448-3735530)
chr8 (49-132)||(3735708-3735790)
[»] chr6 (5 HSPs)
chr6 (9-491)||(13054970-13055458)
chr6 (250-491)||(14357718-14357959)
chr6 (11-230)||(14357466-14357685)
chr6 (45-132)||(23091222-23091308)
chr6 (5-132)||(15360926-15361052)
[»] chr2 (3 HSPs)
chr2 (46-230)||(30543367-30543551)
chr2 (46-132)||(28668066-28668151)
chr2 (47-93)||(21601955-21602001)
[»] chr4 (2 HSPs)
chr4 (45-132)||(18204752-18204838)
chr4 (47-93)||(16705916-16705962)
[»] chr1 (1 HSPs)
chr1 (46-128)||(20265900-20265981)
[»] scaffold0576 (1 HSPs)
scaffold0576 (5-132)||(5910-6036)
[»] chr7 (1 HSPs)
chr7 (49-132)||(2750565-2750647)


Alignment Details
Target: chr3 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 9 - 488
Target Start/End: Complemental strand, 38287167 - 38286690
Alignment:
Q  9 actacgccaaaaaaggtgattaatagcacnnnnnnnagcctttaatagcactcaaaagtgctattaaagcccctgctattgtaaggtataccacctataa 108  Q
    |||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||| |||||||||||||||||  |||||||    
T  38287167 actacgccaaaaaaggtgattaatagcactttttttagcctttaatagcactcaaaagtgctattaaagcccccgctattgtaaggtatacatcctataa 38287068  T
Q  109 tagtacttttaaaatgctattaaagaccatgtattaatagctcttttcatataagtgatatctttagtcatttatttttaccctgtcattaatagccctt 208  Q
    ||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  38287067 tagcacttttaaaatgatattaaagaccctgtattaatagctcttttcatataagtgatatctttaatcatttatttttaccctgtcgttaatagccctt 38286968  T
Q  209 tttataaaagtgttatcgtaagnnnnnnnnnattttcaaattaattaattctaaagatcatttaaaataattatattttcatagaggaatttcattactc 308  Q
    |||||||||||| |||||||||          |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38286967 tttataaaagtgctatcgtaagtttttttt--ttttaaaattaattaattctaaagatcatttaaaataattatattttcatagaggaatttcattactc 38286870  T
Q  309 aaaaatatacaaaacaagtccttcaatgtattcattgtaaaagaacctaacacaatgtatatattatcaagaaaagctcttcaaatttaaacnnnnnnnn 408  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||            
T  38286869 aaaaatatacaaaacaagtcattcaatgtattcattgtaaaagaacctaacacaatgcatatattatcaagaaaagctcttcaaatttaaacaaaaaaaa 38286770  T
Q  409 ctctttgggtcttttatatgtatctctgttccttttcatttcccttatgctatgctcttgtcaatttcttcaacatctct 488  Q
    |||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  38286769 ctctttggatcttttatatgtatctttgttcctcttcatttcccttatgctatgctcttgtcaatttcttcaacatctct 38286690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 132
Target Start/End: Original strand, 18758001 - 18758085
Alignment:
Q  47 cctttaatagcactcaaaagtgctattaaagcccctgctattgtaaggtataccacctataatagtacttttaaaatgctattaaa 132  Q
    ||||| |||||||| |||||||||||||||||| |  ||||||||| |||||||   | |||||| |||||||||  |||||||||    
T  18758001 cctttgatagcactaaaaagtgctattaaagccgccactattgtaa-gtataccgtttttaatagcacttttaaagggctattaaa 18758085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 314; Significance: 1e-177; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 9 - 491
Target Start/End: Complemental strand, 28160874 - 28160384
Alignment:
Q  9 actacgccaaaaaaggtgattaatagcacnnnnnnnagcctttaatagcactcaaaagtgctattaaagcccctgctattgtaaggtataccacctataa 108  Q
    |||||||||||||||||||||||||||||       |||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||    
T  28160874 actacgccaaaaaaggtgattaatagcactttttttagcctttaatagcacttaaaagtgctattaaagcccccgctattgtagggtataccacctataa 28160775  T
Q  109 tagtacttttaaaatgctattaaagaccatgtattaatagctcttttcatataagtgatatctttagtcatttatttttaccctgtcattaatagccctt 208  Q
    ||| ||||||||||||||||| |||||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |    
T  28160774 tagcacttttaaaatgctattgaagaccctgtattaatagcacttttcataaaagtgatatctttagtcatttatttttaccctgtcgttaatagcccat 28160675  T
Q  209 tttataaaagtgttatcgtaagnnnnnnnnnattttcaa--------attaattaattctaaagatcatttaaaataattatattttcatagaggaattt 300  Q
    |||||||||||| |||||||||          |||| ||        | |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28160674 tttataaaagtgctatcgtaagttattttttttttttaaaaaataataataattaattctaaagatcatttaaaataattatattttcatagaggaattt 28160575  T
Q  301 cattactcaaaaatatacaaaacaagtccttcaatgtattcattgtaaaagaacctaacacaatgtatatattatcaagaaaagctcttcaaatttaaac 400  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28160574 cattactcaaaaatatacaaaacaagtcattcaatgtattcattgtaaaagaacctaacacaatgtatatattatcaagaaaagctcttcaaatttaaac 28160475  T
Q  401 nnnnnnnnctctttgggtcttttatatgtatctctgttccttttcatttcccttatgctatgctcttgtcaatttcttcaacatctctgat 491  Q
            || ||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  28160474 aaaaaaatctttttggttcttttatatgtatctctgttcctcttcattttccttatgctatgctcttgtcaatttcttcaacatctctgat 28160384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 47 - 129
Target Start/End: Original strand, 25760237 - 25760318
Alignment:
Q  47 cctttaatagcactcaaaagtgctattaaagcccctgctattgtaaggtataccacctataatagtacttttaaaatgctatt 129  Q
    |||| ||||||||| ||||||||||||||| |||| |||||||||| ||| | ||| ||||||||  |||||||| |||||||    
T  25760237 ccttcaatagcacttaaaagtgctattaaatcccccgctattgtaa-gtacagcacttataatagctcttttaaagtgctatt 25760318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 132
Target Start/End: Complemental strand, 3735530 - 3735448
Alignment:
Q  49 tttaatagcactcaaaagtgctattaaagcccctgctattgtaaggtataccacctataatagtacttttaaaatgctattaaa 132  Q
    |||||||||||| |||||||||||| ||||| | |||||||||| | ||||  ||| | |||| ||||||||| ||||||||||    
T  3735530 tttaatagcacttaaaagtgctattgaagcctccgctattgtaa-gcatacttcctttgatagcacttttaaagtgctattaaa 3735448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 132
Target Start/End: Complemental strand, 3735790 - 3735708
Alignment:
Q  49 tttaatagcactcaaaagtgctattaaagcccctgctattgtaaggtataccacctataatagtacttttaaaatgctattaaa 132  Q
    |||||||||||| |||||||||||| ||||| | |||||||||| | ||||  ||| | |||| ||||||||| ||||||||||    
T  3735790 tttaatagcacttaaaagtgctattgaagcctccgctattgtaa-gcatacttcctttgatagcacttttaaagtgctattaaa 3735708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 290; Significance: 1e-162; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 9 - 491
Target Start/End: Original strand, 13054970 - 13055458
Alignment:
Q  9 actacgccaaaaaaggtgattaatagcacnnnnnnnagcctttaatagcactcaaaagtgctattaaagcccctgctattgtaaggtataccacctataa 108  Q
    |||||||||||||||||||||||||||||       |||||||||||||||| |||||||||||||||||||| ||||||||| || |||||||||||||    
T  13054970 actacgccaaaaaaggtgattaatagcactttttttagcctttaatagcacttaaaagtgctattaaagcccccgctattgtagggaataccacctataa 13055069  T
Q  109 tagtacttttaaaatgctattaaagaccatgtattaatagctcttttcatataagtgatatctttagtcatttatttttaccctgtcattaatagccctt 208  Q
    ||| ||||||||||||||||| |||||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |    
T  13055070 tagcacttttaaaatgctattgaagaccctgtattaatagcacttttcataaaagtgatatctttagtcatttatttttaccctgtcgttaatagcccat 13055169  T
Q  209 tttataaaagtgttatcgtaagnnnnnnnnnattttcaa------attaattaattctaaagatcatttaaaataattatattttcatagaggaatttca 302  Q
    |||||||||||| |||||||||         |     ||      | ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  13055170 tttataaaagtgctatcgtaagttattttttaaaaaaaaaaaattaataattaattctaaagatcatttaaaataagtatattttcatagaggaatttca 13055269  T
Q  303 ttactcaaaaatatacaaaacaagtccttcaatgtattcattgtaaaagaacctaacacaatgtatatattatcaagaaaagctcttcaaatttaaacnn 402  Q
    |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  13055270 ttactcaaaaatttacaaaacaagtcattcaatgtattcattgtaaaagaacctaacacaatgtatatattatcaagaaaagctcttcaaatttaaacaa 13055369  T
Q  403 nnnnnnctctttgggtcttttatatgtatctctgttccttttcatttcccttatgctatgctcttgtcaatttcttcaacatctctgat 491  Q
           ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||||    
T  13055370 aaaaagatctttgggtctttaatatgtatctctgttcctcttcatttcccttatgctatgctcttgtccgtttcttcaacatctctgat 13055458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 250 - 491
Target Start/End: Original strand, 14357718 - 14357959
Alignment:
Q  250 taattaattctaaagatcatttaaaataattatattttcatagaggaatttcattactcaaaaatatacaaaacaagtccttcaatgtattcattgtaaa 349  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  14357718 taattaattctaaagatcatttaaaataattatattttcatagaggaatttcattactcaaaaatatacaaaacaagtcatttaatgtattcattgtaaa 14357817  T
Q  350 agaacctaacacaatgtatatattatcaagaaaagctcttcaaatttaaacnnnnnnnnctctttgggtcttttatatgtatctctgttccttttcattt 449  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||| |||||||||||||||||| |||||||    
T  14357818 agaacctaacacaatgtatatattatcaagaaaagctcttcaaatttaaacaaaaaaaggtctttgggtctttgatatgtatctctgttcctcttcattt 14357917  T
Q  450 cccttatgctatgctcttgtcaatttcttcaacatctctgat 491  Q
    |||||||||||||||||||||  |||||||||||||||||||    
T  14357918 cccttatgctatgctcttgtccgtttcttcaacatctctgat 14357959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 11 - 230
Target Start/End: Original strand, 14357466 - 14357685
Alignment:
Q  11 tacgccaaaaaaggtgattaatagcacnnnnnnnagcctttaatagcactcaaaagtgctattaaagcccctgctattgtaaggtataccacctataata 110  Q
    ||||||||||||||| |||||||||||       || |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  14357466 tacgccaaaaaaggtaattaatagcactttttttagtctttaatagcactcaaaagtgctattaaagcccctgctattgtaggatataccacctataata 14357565  T
Q  111 gtacttttaaaatgctattaaagaccatgtattaatagctcttttcatataagtgatatctttagtcatttatttttaccctgtcattaatagccctttt 210  Q
    | |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |||  | ||||||||||||    
T  14357566 gcacttttaaaatgctattaaagaccctgtattaatagcacttttcatataagtgatatctttagtcatttatttttaccatgtggtcaatagccctttt 14357665  T
Q  211 tataaaagtgttatcgtaag 230  Q
    |||||||||| ||| |||||    
T  14357666 tataaaagtgctattgtaag 14357685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 45 - 132
Target Start/End: Original strand, 23091222 - 23091308
Alignment:
Q  45 agcctttaatagcactcaaaagtgctattaaagcccctgctattgtaaggtataccacctataatagtacttttaaaatgctattaaa 132  Q
    |||||||||||||| | ||||||||| |||||||||| ||||||||||  |||  |||| | ||||| ||||||||||||||||||||    
T  23091222 agcctttaatagcatttaaaagtgctcttaaagcccccgctattgtaa-atatgacaccaacaatagcacttttaaaatgctattaaa 23091308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 132
Target Start/End: Complemental strand, 15361052 - 15360926
Alignment:
Q  5 ttatactacgccaaaaaaggtgattaatagcacnnnnnnnagcctttaatagcactcaaaagtgctattaaagcccctgctattgtaaggtataccacct 104  Q
    ||||||||||||||||||||   ||||||||||        || |||||||||||| |||||||||||| ||||| | |||||||||| | ||||  |||    
T  15361052 ttatactacgccaaaaaagggatttaatagcacttttttttgcttttaatagcacttaaaagtgctattgaagcctccgctattgtaa-gcatacttcct 15360954  T
Q  105 ataatagtacttttaaaatgctattaaa 132  Q
     | |||| ||||||||| ||||||||||    
T  15360953 ttgatagcacttttaaagtgctattaaa 15360926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 6e-26; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 46 - 230
Target Start/End: Original strand, 30543367 - 30543551
Alignment:
Q  46 gcctttaatagcactcaaaagtgctattaaagcccctgctattgtaaggtataccacctataatagtacttttaaaatgctattaaagaccatgtattaa 145  Q
    ||||||||||||||| ||||| ||||| ||| || |  |||||||| |||||||||  | |||||| ||||||||||  |||||||||||||    ||||    
T  30543367 gcctttaatagcacttaaaagggctatcaaaacctcctctattgtagggtataccatttttaatagcacttttaaaacactattaaagaccagtctttaa 30543466  T
Q  146 tagctcttttcatataagtgatatctttagtcatttatttttaccctgtcattaatagccctttttataaaagtgttatcgtaag 230  Q
    |||||||||  | ||||||| |||| | ||||||||||||| | ||  |||||||||||||||||||| |||||| ||| |||||    
T  30543467 tagctctttcgaaataagtgctatcgtaagtcatttattttgaacccttcattaatagccctttttattaaagtgctatagtaag 30543551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 46 - 132
Target Start/End: Complemental strand, 28668151 - 28668066
Alignment:
Q  46 gcctttaatagcactcaaaagtgctattaaagcccctgctattgtaaggtataccacctataatagtacttttaaaatgctattaaa 132  Q
    ||||||||||||||| |||||||||||| ||||| | |||||||||| | ||||  ||||| |||| ||||||||| ||||||||||    
T  28668151 gcctttaatagcacttaaaagtgctattgaagcctccgctattgtaa-gcatactgcctatgatagcacttttaaagtgctattaaa 28668066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 47 - 93
Target Start/End: Complemental strand, 21602001 - 21601955
Alignment:
Q  47 cctttaatagcactcaaaagtgctattaaagcccctgctattgtaag 93  Q
    |||| ||||||||| ||||||||||||||| |||| |||||||||||    
T  21602001 ccttcaatagcacttaaaagtgctattaaatcccccgctattgtaag 21601955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 45 - 132
Target Start/End: Complemental strand, 18204838 - 18204752
Alignment:
Q  45 agcctttaatagcactcaaaagtgctattaaagcccctgctattgtaaggtataccacctataatagtacttttaaaatgctattaaa 132  Q
    ||||||| |||||||| |||||||||||| ||||||| |||||||||| | |||| || | |||||| |||||||||| |||||||||    
T  18204838 agcctttgatagcacttaaaagtgctattgaagcccccgctattgtaa-gcatacaacatttaatagcacttttaaaacgctattaaa 18204752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 47 - 93
Target Start/End: Original strand, 16705916 - 16705962
Alignment:
Q  47 cctttaatagcactcaaaagtgctattaaagcccctgctattgtaag 93  Q
    |||| ||||||||| ||||||||||||||| |||| |||||||||||    
T  16705916 ccttcaatagcacttaaaagtgctattaaatcccccgctattgtaag 16705962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 46 - 128
Target Start/End: Complemental strand, 20265981 - 20265900
Alignment:
Q  46 gcctttaatagcactcaaaagtgctattaaagcccctgctattgtaaggtataccacctataatagtacttttaaaatgctat 128  Q
    ||||||||||||||| |||||||||||| ||||||| |||||||||| | ||||  ||||| |||| ||||||||| ||||||    
T  20265981 gcctttaatagcacttaaaagtgctattgaagcccccgctattgtaa-gcatactgcctatgatagcacttttaaagtgctat 20265900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0576 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 132
Target Start/End: Complemental strand, 6036 - 5910
Alignment:
Q  5 ttatactacgccaaaaaaggtgattaatagcacnnnnnnnagcctttaatagcactcaaaagtgctattaaagcccctgctattgtaaggtataccacct 104  Q
    ||||||||||||||||||||   ||||||||||        || |||||||||||| |||||||||||| ||||| | |||||||||| | ||||  |||    
T  6036 ttatactacgccaaaaaagggatttaatagcacttttttttgcttttaatagcacttaaaagtgctattgaagcctccgctattgtaa-gcatacttcct 5938  T
Q  105 ataatagtacttttaaaatgctattaaa 132  Q
     | |||| ||||||||| ||||||||||    
T  5937 ttgatagcacttttaaagtgctattaaa 5910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 132
Target Start/End: Original strand, 2750565 - 2750647
Alignment:
Q  49 tttaatagcactcaaaagtgctattaaagcccctgctattgtaaggtataccacctataatagtacttttaaaatgctattaaa 132  Q
    |||||||||||| |||||||||||| ||||| | |||||||||| | ||||  ||| | |||| ||||||||| ||||||||||    
T  2750565 tttaatagcacttaaaagtgctattgaagcctccgctattgtaa-gcatacttcctttgatagcacttttaaagtgctattaaa 2750647  T

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