View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4716_high_5 (Length: 428)
Name: NF4716_high_5
Description: NF4716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4716_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 392; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 15 - 418
Target Start/End: Complemental strand, 2759649 - 2759246
Alignment:
| Q |
15 |
ataaaccacgacgtgcacacgttattatttaatcatctaattcgtgcttgcatgataagtattggtgataaaataatgcataattttttctctactagaa |
114 |
Q |
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| T |
2759649 |
ataaaccacgacgtgcacacgttattatttaatcatctaattcgtgcttgcatgataagtattggtgacaaaataatgcataattttttctctactagaa |
2759550 |
T |
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| Q |
115 |
aaaccacaaggtatcctaattcctaacattattctcatcacaaaaatggcagtgtctttatccaaaaaacggtccaaattttcaagaaaattagaaccca |
214 |
Q |
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| T |
2759549 |
aaaccacaaggtatcctaattcctaacattattctcatcacaataatggcagtgtctttatccaaaaaacggtccaaattttcaagaaaattagaaccca |
2759450 |
T |
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| Q |
215 |
aacaatcttgttttgccttcacaattctatacagcttcatacgtagaatttctgctttaatctttcttttaatccttatatacatgtggtcttctttctc |
314 |
Q |
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| T |
2759449 |
aacaatcttgttttgccttcacaattctatacagcttcatacgtagaatttctgctttaatctttcttttaatccttatatacatttggtcttctttctc |
2759350 |
T |
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| Q |
315 |
cacaattataacaggaaacatcattcatgtttgtttttctacaagaaagctcaatgataacttctattgtgtttctgcagccactcatactaatccttcc |
414 |
Q |
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| T |
2759349 |
cacaattataacaggaaacatcattcatgtttgtttttctacaagaaagctcaatgataacttctattgtgtttctgcagccactcatactaatccttcc |
2759250 |
T |
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| Q |
415 |
tttg |
418 |
Q |
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|||| |
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| T |
2759249 |
tttg |
2759246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 257 - 418
Target Start/End: Complemental strand, 2755446 - 2755285
Alignment:
| Q |
257 |
gtagaatttctgctttaatctttcttttaatccttatatacatgtggtcttctttctccacaattataacaggaaacatcattcatgtttgtttttctac |
356 |
Q |
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|||||||||| |||||||||||||||||| |||| || ||||||||||||||||| ||||| |||||||||| |||| |||||||||||||| |||||| |
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| T |
2755446 |
gtagaatttcggctttaatctttcttttattcctaatctacatgtggtcttctttatccactattataacagtcaacaccattcatgtttgttgttctac |
2755347 |
T |
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| Q |
357 |
aagaaagctcaatgataacttctattgtgtttctgcagccactcatactaatccttcctttg |
418 |
Q |
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| T |
2755346 |
aagaaagttcagtaatagcttttattgtctttcttcacccactcatactaatacttcctttg |
2755285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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