View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4716_high_6 (Length: 406)
Name: NF4716_high_6
Description: NF4716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4716_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 1e-91; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 19 - 189
Target Start/End: Original strand, 46290014 - 46290184
Alignment:
| Q |
19 |
actgttgtgtcggaaatttgatattacatgtccatgtttccaacacttattattttgcatctgatgcattgtttattcattatctctttgttgcttaaaa |
118 |
Q |
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| T |
46290014 |
actgttgtgtcggaaatttgatattacatgtccatgtttccaacacttattattttgcatctgatgcattgtttattcattatctctttgttgcttaaaa |
46290113 |
T |
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| Q |
119 |
gcaaatgccatctattctatattgttttacttacagcagtgtagtgcttttgtcatagattgtgacttggc |
189 |
Q |
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| T |
46290114 |
gcaaatgccatctattctatattgttttacttacagcagtgtagtgcttttgtcatagattgtgacttggc |
46290184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 233 - 392
Target Start/End: Original strand, 46290228 - 46290387
Alignment:
| Q |
233 |
gtgttacaggatccgagggccattaggttctttgaccgtcgggtaagttcatcactgttaatgtcgatannnnnnnnatgttttcttaatgattcagttt |
332 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
46290228 |
gtgttacaggatccgagggccattaggttctttgaccgtcgggtaagttcatcactgttaatgtcgatattttttttatgttttcttaatgattcagttt |
46290327 |
T |
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| Q |
333 |
agtaaatttttcatgtaggcacatttttcttatgtctgaaatgtcatcctttcttcatct |
392 |
Q |
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| T |
46290328 |
agtaaatttttcatgtaggcacatttttcttatgtctgaaatgtcatcctttcttcatct |
46290387 |
T |
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