View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4716_high_7 (Length: 389)
Name: NF4716_high_7
Description: NF4716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4716_high_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 29 - 372
Target Start/End: Complemental strand, 49303463 - 49303123
Alignment:
| Q |
29 |
atgtcaaatgtggaaaatgttggttgatatgtgaggaatgtgtgttagttatacttgaagttttggtgtgttgtttgttgagttaataagccaaacgtcg |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
49303463 |
atgtcaaatgtggaaaatgttggttgatatgtgaggaatgtgtgttagttatacttgaagttttggtgtgttgtttgttgagttaataagccaaacgtgg |
49303364 |
T |
|
| Q |
129 |
catgcttatataggggtttttgaacggaagaaattaaggcttgttgttgggaaagaaaagtagaaaagtggagaatcgtcgattagatatttgggtcact |
228 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| | |
|
|
| T |
49303363 |
catgcttatataggggtttttgaagggaagaaattaaggcttgttg---ggaaagaaaagtagaaaagtggagaatcgtccattagatatttgggtcatt |
49303267 |
T |
|
| Q |
229 |
ttcaaaatcattgaaagtgattcatcaattaagtctacaaaatgatatattctttatccatgcatgcatacggaaacaaatcaagacaagtagtccttgg |
328 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49303266 |
ttcaaaatcgttgaaagtgattgatcaattaagtctacaaaacgatatattctttatccatgcatgcatacggaaacaaatcaagacaagtagtccttgg |
49303167 |
T |
|
| Q |
329 |
gtacggtttcaaaagtaatttaattgtttatgtatatgttattt |
372 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49303166 |
gtacggtttcaaaagtaatttaattgtttatgtatatgttattt |
49303123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 29 - 263
Target Start/End: Complemental strand, 49289782 - 49289548
Alignment:
| Q |
29 |
atgtcaaatgtggaaaatgttggttgatatgtgaggaatgtgtgttagttatacttgaagttttggtgtgttgtttgttgagttaataagccaaacgtcg |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
49289782 |
atgtcaaatgtggaaaatgttggttgatatgtgaggaatgtgtgttagttatacttgaagttttggtgtgttgtttgttgagttaataagccaaacgtgg |
49289683 |
T |
|
| Q |
129 |
catgcttatataggggtttttgaacggaagaaattaaggcttgttgttgggaaagaaaagtagaaaagtggagaatcgtcgattagatatttgggtcact |
228 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49289682 |
catgcttatataggggtttttgaagggaagaaattaaggcttgttgttggaaaagaaaagtagaaaagtggagaatcgtcgattagatatttgggtcact |
49289583 |
T |
|
| Q |
229 |
ttcaaaatcattgaaagtgattcatcaattaagtc |
263 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |
|
|
| T |
49289582 |
ttcaaaatcattgaaagtgattgatcaattaagtc |
49289548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 29 - 263
Target Start/End: Complemental strand, 49296733 - 49296499
Alignment:
| Q |
29 |
atgtcaaatgtggaaaatgttggttgatatgtgaggaatgtgtgttagttatacttgaagttttggtgtgttgtttgttgagttaataagccaaacgtcg |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
49296733 |
atgtcaaatgtggaaaatgttggttgatatgtgaggaatgtgtgttagttatacttgaagttttggtgtgttgtttgttgagttaataagccaaacgtgg |
49296634 |
T |
|
| Q |
129 |
catgcttatataggggtttttgaacggaagaaattaaggcttgttgttgggaaagaaaagtagaaaagtggagaatcgtcgattagatatttgggtcact |
228 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
49296633 |
catgcttatataggggtttttgaagggaagaaattaaggcttgttgttggaaaagaaaagtagaaaagtggagaatcgtcgattagatgtttgggtcact |
49296534 |
T |
|
| Q |
229 |
ttcaaaatcattgaaagtgattcatcaattaagtc |
263 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |
|
|
| T |
49296533 |
ttcaaaatcattgaaagtgattgatcaattaagtc |
49296499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 287 - 353
Target Start/End: Complemental strand, 49289488 - 49289425
Alignment:
| Q |
287 |
catgcatgcatacggaaacaaatcaagacaagtagtccttgggtacggtttcaaaagtaatttaatt |
353 |
Q |
| |
|
||||||||||||||| ||||||||||||||| ||||||| ||||||| ||||| | |||||||||| |
|
|
| T |
49289488 |
catgcatgcatacgg-aacaaatcaagacaa--agtcctttggtacggcttcaagaataatttaatt |
49289425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University