View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4716_high_8 (Length: 358)
Name: NF4716_high_8
Description: NF4716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4716_high_8 |
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| [»] scaffold0249 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 2 - 340
Target Start/End: Complemental strand, 22616255 - 22615917
Alignment:
| Q |
2 |
tttggttatagagattgcgatgctttcgtgcaggtatatatatcttgggttattcgacagtgaagtagaagctgcaaggtcctaagcactaatgaactat |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22616255 |
tttggttatagagattgcgatgctttcgtgcaggtatatatatcttgggttattcgacagtgaagtagaagctgcaaggtcctaagcactaatgaactat |
22616156 |
T |
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| Q |
102 |
tacatgctacctgcactgaatttatttcacttgattatcaagctcatttggattgcatccaacatgtatcttccttctgattttttgaaaattagggctt |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22616155 |
tacatgctacctgcactgaatttatttcacttgattatcaagctcatttggattgcatccaacatgtatcttccttctgattttttgaaaattagggctt |
22616056 |
T |
|
| Q |
202 |
atgacaaagcagctatccaaaataatggaagggaagcaatgactaattttgaggccagtacatatgaaggagagatgaaatctgcagccatcaatgaggg |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22616055 |
atgacaaagcagctatccaaaataatggaagggaagcaatgactaattttgaggccagtacatatgaaggagagatgaaatctgcagccatcaatgaggg |
22615956 |
T |
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| Q |
302 |
taacaaaccttctatagcacagatcttatttaacttaag |
340 |
Q |
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|||||||| |||||||||||||||||||||||||||||| |
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| T |
22615955 |
taacaaacattctatagcacagatcttatttaacttaag |
22615917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 2 - 185
Target Start/End: Complemental strand, 21890328 - 21890145
Alignment:
| Q |
2 |
tttggttatagagattgcgatgctttcgtgcaggtatatatatcttgggttattcgacagtgaagtagaagctgcaaggtcctaagcactaatgaactat |
101 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
21890328 |
tttggttatagagattgcaatgctttcgtgcaggtatatatatcttgggttattcgacagtgaagtagaagctgcaaggtcctaagcactaatgaattat |
21890229 |
T |
|
| Q |
102 |
tacatgctacctgcactgaatttatttcacttgattatcaagctcatttggattgcatccaacatgtatcttccttctgatttt |
185 |
Q |
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||||| |||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||| |||| ||||||| |
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| T |
21890228 |
tacattctacctgcactgaatttattacacttgattatcaagctcatttgcaatgcatccaacatgtatctcccttttgatttt |
21890145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 2 - 185
Target Start/End: Original strand, 41050062 - 41050245
Alignment:
| Q |
2 |
tttggttatagagattgcgatgctttcgtgcaggtatatatatcttgggttattcgacagtgaagtagaagctgcaaggtcctaagcactaatgaactat |
101 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
41050062 |
tttggttatagaaattgcgatgctttcgtgcaggtatatatatcttgggttattcgacagtgaagtagaagctgcaaggtcctaagcactaatgaattat |
41050161 |
T |
|
| Q |
102 |
tacatgctacctgcactgaatttatttcacttgattatcaagctcatttggattgcatccaacatgtatcttccttctgatttt |
185 |
Q |
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||||| |||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||| |||| ||||||| |
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| T |
41050162 |
tacattctacctgcactgaatttattacacttgattatcaagctcatttgcaatgcatccaacatgtatctcccttttgatttt |
41050245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 140; Significance: 3e-73; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 2 - 185
Target Start/End: Original strand, 13623493 - 13623676
Alignment:
| Q |
2 |
tttggttatagagattgcgatgctttcgtgcaggtatatatatcttgggttattcgacagtgaagtagaagctgcaaggtcctaagcactaatgaactat |
101 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
13623493 |
tttggttatagagattgcgatgctttcgtgtaggtatatatatcttgggttattcgacagtgaagtagaagctgcaaggtcctaagcactaatgaattat |
13623592 |
T |
|
| Q |
102 |
tacatgctacctgcactgaatttatttcacttgattatcaagctcatttggattgcatccaacatgtatcttccttctgatttt |
185 |
Q |
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||||| ||||||||||||||||||| |||||||||| ||||||||||| | |||||||||||||||||| |||| ||||||| |
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| T |
13623593 |
tacattatacctgcactgaatttattacacttgattaataagctcatttgcaatgcatccaacatgtatctcccttttgatttt |
13623676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 2 - 185
Target Start/End: Original strand, 11168090 - 11168275
Alignment:
| Q |
2 |
tttggttatagagattgcgatgctttcgtgcaggtatatatatcttggg--ttattcgacagtgaagtagaagctgcaaggtcctaagcactaatgaact |
99 |
Q |
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||||||||||||||||| |||||||| ||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| | |
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| T |
11168090 |
tttggttatagagattgtgatgcttttgtgtaggtatatatatcttgggggttattcgacagtgaagtagaagttgcaaggtcctaagcactaatgaatt |
11168189 |
T |
|
| Q |
100 |
attacatgctacctgcactgaatttatttcacttgattatcaagctcatttggattgcatccaacatgtatcttccttctgatttt |
185 |
Q |
| |
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||||||| |||||||||||||||||||| || |||||||||||||||||||| | |||||||||||||||||| |||| ||||||| |
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| T |
11168190 |
attacattctacctgcactgaatttattacatttgattatcaagctcatttgcaatgcatccaacatgtatctcccttttgatttt |
11168275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0249 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: scaffold0249
Description:
Target: scaffold0249; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 2 - 185
Target Start/End: Original strand, 18985 - 19165
Alignment:
| Q |
2 |
tttggttatagagattgcgatgctttcgtgcaggtatatatat--cttgggttattcgacagtgaagtagaagctgcaaggtcctaagcactaatgaact |
99 |
Q |
| |
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||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
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| T |
18985 |
tttggttatagagattgtgatgctttcttgcaggtatatatatatcttgggttattcgacagt-----agaagctgcaaggtcctaagcactaatgaatt |
19079 |
T |
|
| Q |
100 |
attacatgctacctgcactgaatttatttcacttgattatcaagctcatttggattgcatccaacatgtatcttccttctgatttt |
185 |
Q |
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||||||| |||||||||||||||||||| || |||||||||||||||||||| | |||||||||||||||||| |||| ||||||| |
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| T |
19080 |
attacattctacctgcactgaatttattacaattgattatcaagctcatttgcaatgcatccaacatgtatctcccttttgatttt |
19165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 6 - 84
Target Start/End: Original strand, 39645178 - 39645256
Alignment:
| Q |
6 |
gttatagagattgcgatgctttcgtgcaggtatatatatcttgggttattcgacagtgaagtagaagctgcaaggtcct |
84 |
Q |
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|||||||| ||||| ||| |||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |
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| T |
39645178 |
gttatagatattgcaatgatttcatgcaggtatatatatcttgggctattcgacagcgaagtagaagctgcaaggtcct |
39645256 |
T |
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