View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4716_low_1 (Length: 814)
Name: NF4716_low_1
Description: NF4716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4716_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 268 - 553
Target Start/End: Original strand, 48301969 - 48302254
Alignment:
| Q |
268 |
tttaataactaaattttgataaaatgtattgaagttggtttttcactttttaaggaaatcaatatcattactagaaaatatatttgggaaaagaaaaata |
367 |
Q |
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| T |
48301969 |
tttaataactaaattttgataaaatgtattgaagttggtttttcactttttaaggaaatcagtatcattactagaaaatatatttgggaaaagaaaaata |
48302068 |
T |
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| Q |
368 |
agtgtatctagaaaattgcacagggtttcatattaagacgcaaacaaatgtttcaaaatagtcatataatgtatgataggggatcataagataaagcaaa |
467 |
Q |
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| T |
48302069 |
agtgtatctagaaaattgcacagggtttcatattaagacgcaaacaaatgtttcaaaatggtcatataatagaagataggggagcataatataaagcaaa |
48302168 |
T |
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| Q |
468 |
aatattaaagtctttttcgcatgtcattgtgatattcaagcaatgataaatcttcttttgctctgtacaattccacattcaaatat |
553 |
Q |
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| T |
48302169 |
aatattaaagtctttttcgcatgacattgtgatattcaagcaatgataaatcttcttttgctctgtacaattccacattcaaatat |
48302254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 553 - 801
Target Start/End: Original strand, 48302575 - 48302823
Alignment:
| Q |
553 |
tgaattgaatgtggaaatacaatgaaaaatagtgnnnnnnnccggaacatttattatcaaaactgaactctaatagatatattttatttagtcataggaa |
652 |
Q |
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| T |
48302575 |
tgaattgaatgtggaaatacaatgaaaaatagtgaaaaaaaccggaacatttattatcaaaactgaactcaaatagatatattttatttagtcataggaa |
48302674 |
T |
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| Q |
653 |
gttgaaattcagttaccgttaatcaactcaagttaacaaaccaaaattaaaaccttttcgtaataaaaacactaatataggcaaatcaaaattcattcat |
752 |
Q |
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| T |
48302675 |
gttgaaattcagttaccgttaatcaactcaagttaacaaaccaaaattaaaaccttttcgtaataaaaacactaatataggcaaatcaaaattcattcat |
48302774 |
T |
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| Q |
753 |
actgagattattacacgttactagtacatcgcatgataatcggcaatta |
801 |
Q |
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| T |
48302775 |
actgagattattacacattactagtacatagcatgataatcggcaatta |
48302823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 33 - 164
Target Start/End: Original strand, 48301800 - 48301939
Alignment:
| Q |
33 |
tgtgctatggtagaatttgtgcaccttcacatttaatgcaccttaaggaattggttggacaatgcaaattgtctt--------taccacaagttagtta- |
123 |
Q |
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| T |
48301800 |
tgtgctatggtagaatttgttcaccttcacatttaatgcaccttaaggaattggttggacaatgcaaattgtctttatgtgaataccacaagttagttat |
48301899 |
T |
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| Q |
124 |
ttagtcactactccattcatccttagttataaaatcctttg |
164 |
Q |
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| T |
48301900 |
ttagtcactact-cattcgtccttatttataagatcctttg |
48301939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 222 - 271
Target Start/End: Original strand, 48301900 - 48301949
Alignment:
| Q |
222 |
ttagtcactactcattcgtccttatttataagatcttatggtatttttta |
271 |
Q |
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| T |
48301900 |
ttagtcactactcattcgtccttatttataagatcctttggtatttttta |
48301949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 49 - 108
Target Start/End: Complemental strand, 36297922 - 36297863
Alignment:
| Q |
49 |
ttgtgcaccttcacatttaatgcaccttaaggaattggttggacaatgcaaattgtcttt |
108 |
Q |
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| T |
36297922 |
ttgtgcaccttcacgtttaatgcaccttaaaaaattggttggacaatgcaagttgtcttt |
36297863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 676 - 710
Target Start/End: Original strand, 45928340 - 45928374
Alignment:
| Q |
676 |
caactcaagttaacaaaccaaaattaaaacctttt |
710 |
Q |
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| T |
45928340 |
caactcaagttaacaaaccaaaattaaaacttttt |
45928374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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