View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4716_low_17 (Length: 287)
Name: NF4716_low_17
Description: NF4716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4716_low_17 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 13 - 287
Target Start/End: Complemental strand, 46290713 - 46290441
Alignment:
| Q |
13 |
agcagagaggcgtgtattgatcagtcaagaggcagtaggacaataggtattcaataggaaaggggatggatggtgagggtgttctcttcataaagtgctc |
112 |
Q |
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| T |
46290713 |
agcagagaggcgtgtattgatcagtcaagaggcagtaggacaataggtattcaataggaaaggggatggatggtgagggtgttctcttcataaagtgctc |
46290614 |
T |
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| Q |
113 |
gttcactttagctttctgaattctagcaataatacagattttctttcactcttttgtccnnnnnnnctgcctttatgttttatcacaaactactaggatc |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||| |||||| |
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| T |
46290613 |
gttcactttagctttctgaattctagcaataatacagattttctttcactc--ttgtcctttttttcggcctttatgttttatcacaaactaccaggatc |
46290516 |
T |
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| Q |
213 |
ctaacatagttcaggccaaattacttcgggattacaaacttgaaaaatattttgattaatatttctcacacaaga |
287 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46290515 |
ctaacatagttcaggccaaattacttcggaattacaaacttgaaaaatattttgattaatatttctcacacaaga |
46290441 |
T |
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