View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4716_low_19 (Length: 251)
Name: NF4716_low_19
Description: NF4716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4716_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 32704304 - 32704542
Alignment:
| Q |
1 |
cattgtttcttaattagtcgtaattgactcatcaggggtgacaacttctttgttggggaatacttaggtatcagctgggaatgcctcgtctaaatccttt |
100 |
Q |
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| T |
32704304 |
cattgtttcttaattagtcgtgattgactcatctggggtgacaacttctttgttggggaatacttaggtatcagctgggaatgactcgtctaaatccttc |
32704403 |
T |
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| Q |
101 |
aacacctctcatgcgattaaatatccttcccaccttggtcatggaccttaacaatcaacgacattgtttgttgtttctttaataagtaacacttcatttg |
200 |
Q |
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|||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
32704404 |
aacacctc--atgcgattaaaaatccttcccaccttggtcatggaccttagcaatcaacgacattgtttgttgtttctttagtaagtaacacttcatttg |
32704501 |
T |
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| Q |
201 |
ttgcattcgttcatatgtcctagttatgcctatcgcctttg |
241 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
32704502 |
ttgcattcgttcatatgtcctagttatgcctatcgcctttg |
32704542 |
T |
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