View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4716_low_22 (Length: 245)
Name: NF4716_low_22
Description: NF4716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4716_low_22 |
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| [»] scaffold0249 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 22616303 - 22616536
Alignment:
| Q |
1 |
atactactatcttatacatgattctcataacactataaagagcctaaaagtgtgtccagaattaagctgaaactgattcacttgttggaggccttagggt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22616303 |
atactactatcttatacatgattctcataacactataaagagcctaaaagtgtgtccagaattaagctgaaactgattcacttgttggaggccttagggt |
22616402 |
T |
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| Q |
101 |
tttaaattcataatatctcatatgatcatagtaaactacttcagttaaattaaaaataggttctcactttttgccaaggaattgtcccattcgagcttcc |
200 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22616403 |
tttaaattcataatatctcatgtgatcatagtaaactacttcagttaaattaaaaataggttctcactttttgccaaggaattgtcccattcgagcttcc |
22616502 |
T |
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| Q |
201 |
caacggccacatttgtgcagtgttactcctctgt |
234 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
22616503 |
caacggccacatttgtgcagtgttactcctctgt |
22616536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 169; Significance: 9e-91; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 21890375 - 21890610
Alignment:
| Q |
1 |
atactactatcttatacatgattctcataacactataaagagcctaaaagtgtgtccagaattaagctgaaactgattcactt--gttggaggccttagg |
98 |
Q |
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| T |
21890375 |
atactactatcttatacatgtttctcataacatgataaagagcctaaaagtgtgtcgagaattaagctgaaactcattcacttttgttggaggccttagg |
21890474 |
T |
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| Q |
99 |
gttttaaattcataatatctcatatgatcatagtaaactacttcagttaaattaaaaataggttctcactttttgccaaggaattgtcccattcgagctt |
198 |
Q |
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| T |
21890475 |
attttaaattcataatatctcatgtgatcatagtaaataactaaagttaaattaaaaataggttctcactttttaccaaggaattgacccattcgagctt |
21890574 |
T |
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| Q |
199 |
cccaacggccacatttgtgcagtgttactcctctgt |
234 |
Q |
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| T |
21890575 |
cccaacggccacatttgtgcagtgttcctcctctgt |
21890610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 234
Target Start/End: Original strand, 22121883 - 22121956
Alignment:
| Q |
161 |
ttctcactttttgccaaggaattgtcccattcgagcttcccaacggccacatttgtgcagtgttactcctctgt |
234 |
Q |
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| T |
22121883 |
ttcttacttcttcccaagaaactgtcccatacgagcttcccatcgtccacatttatgcagagtaactcctctgt |
22121956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 234
Target Start/End: Complemental strand, 40512590 - 40512517
Alignment:
| Q |
161 |
ttctcactttttgccaaggaattgtcccattcgagcttcccaacggccacatttgtgcagtgttactcctctgt |
234 |
Q |
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| T |
40512590 |
ttcttacttcttcccaagaaactgtcccatacgagcttcccatcgtccacatttatgcagagtaactcctctgt |
40512517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 41050014 - 41049779
Alignment:
| Q |
1 |
atactactatcttatacatgattctcataacactataaagagcctaaaagtgtgtccagaattaagctgaaactgattcactt--gttggaggccttagg |
98 |
Q |
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|||||||||||||||||||| ||||| |||||| |||||||||||||||||||||| ||||||||||||||||| |||||||| || |||||||||||| |
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| T |
41050014 |
atactactatcttatacatgtttctcgtaacacgataaagagcctaaaagtgtgtcgagaattaagctgaaactcattcacttttgtcggaggccttagg |
41049915 |
T |
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| Q |
99 |
gttttaaattcataatatctcatatgatcatagtaaactacttcagttaaattaaaaataggttctcactttttgccaaggaattgtcccattcgagctt |
198 |
Q |
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| T |
41049914 |
attttaaattcataatatctcatgtgatcatagtaaataactaaagttaaattaaaaataggttctcactttttaccaaggaattgacccattcgagctt |
41049815 |
T |
|
| Q |
199 |
cccaacggccacatttgtgcagtgttactcctctgt |
234 |
Q |
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| T |
41049814 |
cccaacggccacatttgtgcagtgttcctcctctgt |
41049779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0249 (Bit Score: 161; Significance: 6e-86; HSPs: 1)
Name: scaffold0249
Description:
Target: scaffold0249; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 18937 - 18702
Alignment:
| Q |
1 |
atactactatcttatacatgattctcataacactataaagagcctaaaagtgtgtccagaattaagctgaaactgattcactt--gttggaggccttagg |
98 |
Q |
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|||||||||||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
18937 |
atactactatcttatacatgtttctcataacacgataaagagcctaaaagtgtgtcgagaattaagctgaaactcattcacttttgttggaggccttagg |
18838 |
T |
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| Q |
99 |
gttttaaattcataatatctcatatgatcatagtaaactacttcagttaaattaaaaataggttctcactttttgccaaggaattgtcccattcgagctt |
198 |
Q |
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|||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||| | ||||| ||||||||||| ||||||||||||| |
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| T |
18837 |
attttaaattcataatatctcatgtgatcatagtaaataactaaagttaaattaaaaataggttcttagtttttaccaaggaattgacccattcgagctt |
18738 |
T |
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| Q |
199 |
cccaacggccacatttgtgcagtgttactcctctgt |
234 |
Q |
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| T |
18737 |
cccaacggccacatctgtgcagtgttactcccctgt |
18702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 27 - 234
Target Start/End: Complemental strand, 13621850 - 13621641
Alignment:
| Q |
27 |
ataacactataaagagcctaaaagtgtgtccagaattaagctgaaactgattcactt--gttggaggccttagggttttaaattcataatatctcatatg |
124 |
Q |
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||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||| || |
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| T |
13621850 |
ataacacgataaagagcctaaaagtgtgtcgagaattaagctgaaactcattcacttttgttggaggccttaggattttaaattcataatatctcatgtg |
13621751 |
T |
|
| Q |
125 |
atcatagtaaactacttcagttaaattaaaaataggttctcactttttgccaaggaattgtcccattcgagcttcccaacggccacatttgtgcagtgtt |
224 |
Q |
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||||||||||| ||| ||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||| |
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| T |
13621750 |
atcatagtaaataactaaagttaaattaaaaataggttctctgtttttaccaaggaattgacccattcgagcttcccaacggccacatctgtgcagtgtt |
13621651 |
T |
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| Q |
225 |
actcctctgt |
234 |
Q |
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||||| |||| |
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| T |
13621650 |
actcccctgt |
13621641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 151 - 234
Target Start/End: Complemental strand, 39644933 - 39644850
Alignment:
| Q |
151 |
taaaaataggttctcactttttgccaaggaattgtcccattcgagcttcccaacggccacatttgtgcagtgttactcctctgt |
234 |
Q |
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| T |
39644933 |
taaaagtaggtcctcactttttgccaaggagttgtcccattctagcttcccaacgaccacatttgtgaagtgttactcctctgt |
39644850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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