View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4716_low_24 (Length: 240)
Name: NF4716_low_24
Description: NF4716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4716_low_24 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 21 - 240
Target Start/End: Complemental strand, 38831962 - 38831743
Alignment:
| Q |
21 |
tattttcctctccgttgggaaagcacaggacaacaatggtggtacgcatcaccaatcgatttagcagcagcaaatggccactacgatctcgtcattgagc |
120 |
Q |
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| T |
38831962 |
tattttcctctccgttgggaaagcacaggacaacaatggtggtacgcatcaccaatcgatttagcagcagcaaatggccactacgatctcgtcattgagc |
38831863 |
T |
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| Q |
121 |
ttcttcacctcgacacaaacctcctcatcaaactcacttcccttcaaagacttcgccgtctcgaatctctctggaaccacaacgaatctcagttccaaac |
220 |
Q |
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| T |
38831862 |
ttcttcacctcgacacaaacctcctcatcaaactcacttcccttcaaagacttcgccgtctcgaatctctctggaaccacaacgaatctcagttccaaac |
38831763 |
T |
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| Q |
221 |
cgtcgctaaatgtcgctctc |
240 |
Q |
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| T |
38831762 |
cgtcgctaaatgtcgctctc |
38831743 |
T |
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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 97
Target Start/End: Original strand, 34396857 - 34396930
Alignment:
| Q |
24 |
tttcctctccgttgggaaagcacaggacaacaatggtggtacgcatcaccaatcgatttagcagcagcaaatgg |
97 |
Q |
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| T |
34396857 |
tttcctctacgttgggagagcacaggagaccaatggtggtatgcaacacctattgatttagcagctgcaaatgg |
34396930 |
T |
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