View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4716_low_29 (Length: 214)
Name: NF4716_low_29
Description: NF4716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4716_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 3343648 - 3343464
Alignment:
| Q |
1 |
tggtactttcatcctcatgttttctaaaaccaagcttaccaaccaagaaactgaggctaacaccatatgaaaacataacaaaactactaatggtcatttg |
100 |
Q |
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| T |
3343648 |
tggtactttcatcctcatgttttctgaaaccaagcttaccaaccaagaaactgaggctaacaccatatgaaaacataacaaaactactaatggtcatttg |
3343549 |
T |
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| Q |
101 |
ccgtttattaaacgacgtggagagttatcaggtaaattagttaattgtagtattggtgctccattttcacttgctcatattattt |
185 |
Q |
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| T |
3343548 |
ccgtttattaaacgacgtggagagttatcaggtaaattagttaattgtagtattggtgctccattttcacttgctcatattattt |
3343464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 3368504 - 3368368
Alignment:
| Q |
1 |
tggtactttcatcctcatgttttctaaaaccaagcttaccaaccaagaaactgaggctaacaccatatgaaaacataacaaaactactaatggtcatttg |
100 |
Q |
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|||| ||| |||||||||||||||| |||||||||||||||||||||| || | ||||||| ||||||||||||||||||||||||||||| ||||||| |
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| T |
3368504 |
tggtgcttccatcctcatgttttctgaaaccaagcttaccaaccaagacgctcaagctaacagcatatgaaaacataacaaaactactaatgatcatttg |
3368405 |
T |
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| Q |
101 |
ccgtttattaaacgacgtggagagttatcaggtaaat |
137 |
Q |
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| T |
3368404 |
tcgtttattaaatgatgttgtgagttatcaggtaaat |
3368368 |
T |
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