View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4716_low_4 (Length: 428)
Name: NF4716_low_4
Description: NF4716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4716_low_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 211 - 414
Target Start/End: Complemental strand, 43828484 - 43828281
Alignment:
| Q |
211 |
gtaaccaaccatatcccatgtgctaatgctaacttgtattaaaattgagtttctggactaaatatagaaacatacaggttcggaataataaatgaataaa |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43828484 |
gtaaccaaccatatcccatgtgctaatgctaacttgtattaaaattgagtttctggactaaatatagaaacatacaggttcggaataataaatgaataaa |
43828385 |
T |
|
| Q |
311 |
ataacaaacttgttattgccaatttatagaaacaatacagttattttgaagttgaaaagccaactggactttcaactttcaaggatagagaactctctgc |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43828384 |
ataacaaacttgttattgccaatttatagaaacaacacagttattttgaagttgaaaagccaactggactttcaactttcaaggatagagaactctctgc |
43828285 |
T |
|
| Q |
411 |
cagt |
414 |
Q |
| |
|
|||| |
|
|
| T |
43828284 |
cagt |
43828281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 20 - 149
Target Start/End: Complemental strand, 43828671 - 43828546
Alignment:
| Q |
20 |
gggactcctgtgtggtctgtaccctcccaaacatatagattatgtactgccaaactctgcattattaattaattaataatcacaatgtcaaacaatacta |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
43828671 |
gggactcctgtgtggtctgtaccctcccaaacatatagattatgtactgccaaactctgcattattaat----taataatcacaatgtcaaacaatacta |
43828576 |
T |
|
| Q |
120 |
ctaccattttctttttggcacaaagtggag |
149 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |
|
|
| T |
43828575 |
ctaccattttctttttggtacaaagtggag |
43828546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University