View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4716_low_8 (Length: 370)
Name: NF4716_low_8
Description: NF4716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4716_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 17 - 293
Target Start/End: Complemental strand, 37863878 - 37863604
Alignment:
| Q |
17 |
cactaacctccactaagttattctataatagacaaacacatcccttaacacaattattattctgttaatttcttttcttccctatttccattttccatcg |
116 |
Q |
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| T |
37863878 |
cactaacctccactaagttattctataatagacaaacacatcccttaacaccattattattctgttaatttcttttcttccctatttccattttccatcg |
37863779 |
T |
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| Q |
117 |
tttgtgacatggagtttcgcttcagagttgttgcaccttgcaagtatcacaacgtcaacataaattattattnnnnnnnnnctcacaacaatagcgagta |
216 |
Q |
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| T |
37863778 |
tttgtgacatggagtttcgcttcagagttgttgcaccttgcaagaatcacaacgtcaacataaattattattaaaaaaaaactcacaacaatagcgagta |
37863679 |
T |
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| Q |
217 |
aattctgaaaattgtaatcagtcttattctttcttcacccacacccacaccgagcaacaacaacaaagttgattcag |
293 |
Q |
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| T |
37863678 |
aattctgaaaattgtaattagtcttattctttcttcacccacacc--caccgagcaacaacaacaaagttgattcag |
37863604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 293 - 370
Target Start/End: Complemental strand, 37863573 - 37863496
Alignment:
| Q |
293 |
gcagcagcagacaaagcaacccgtgcataaatcaaaatagaatcactaatccatttttgtcctttttctccttgttcc |
370 |
Q |
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| T |
37863573 |
gcagcagcagacaaagcaacccgtgcataaatcaaaatagaatcactaatccatttttgtcttttttctccttgttcc |
37863496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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