View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4717-Insertion-10 (Length: 382)

Name: NF4717-Insertion-10
Description: NF4717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4717-Insertion-10
NF4717-Insertion-10
[»] chr2 (17 HSPs)
chr2 (8-382)||(821039-821414)
chr2 (172-343)||(410184-410355)
chr2 (174-303)||(965427-965561)
chr2 (218-320)||(982091-982193)
chr2 (186-343)||(1403192-1403349)
chr2 (20-106)||(957858-957945)
chr2 (212-308)||(974016-974112)
chr2 (8-106)||(973776-973875)
chr2 (235-343)||(1399487-1399595)
chr2 (8-96)||(965211-965300)
chr2 (189-274)||(824884-824966)
chr2 (8-100)||(1400003-1400093)
chr2 (8-100)||(1403721-1403814)
chr2 (225-329)||(989773-989877)
chr2 (224-275)||(963578-963629)
chr2 (8-96)||(410469-410558)
chr2 (182-226)||(1024888-1024932)
[»] chr6 (2 HSPs)
chr6 (207-326)||(10116747-10116866)
chr6 (7-96)||(10116514-10116604)
[»] chr3 (3 HSPs)
chr3 (189-344)||(45810468-45810623)
chr3 (8-108)||(45810248-45810349)
chr3 (182-226)||(8312102-8312146)
[»] chr7 (7 HSPs)
chr7 (196-336)||(1445999-1446139)
chr7 (195-337)||(12105209-12105351)
chr7 (196-274)||(1459312-1459390)
chr7 (8-106)||(12105489-12105588)
chr7 (51-101)||(1459138-1459188)
chr7 (224-268)||(1333502-1333546)
chr7 (224-268)||(28449797-28449841)
[»] chr1 (1 HSPs)
chr1 (173-273)||(48675436-48675532)
[»] chr5 (1 HSPs)
chr5 (224-275)||(36199113-36199164)


Alignment Details
Target: chr2 (Bit Score: 352; Significance: 0; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 8 - 382
Target Start/End: Complemental strand, 821414 - 821039
Alignment:
Q  8 gctaacataatgtgattacattgttggcctgcaagtgcaaagtcc-gcatagtgcaagttgtaaggtttaatgaaacgcaacttggaacagatttcggat 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  821414 gctaacataatgtgattacattgttggcctgcaagtgcaaagtcccgcatagtgcaagttgtaaggtttaatgaaacgcaacttggaacagatttcggat 821315  T
Q  107 agagccaatagtgcattctaatgttgccaattaacttctgttaatagtacacataaaaataaaagaataaaggtatgttaagaaaagataaatcaaatag 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  821314 agagccaatagtgcattctaatgttgccaattaacttctgttaataatacacataaaaataaaagaataaaggtatgttaagaaaagataaatcaaatag 821215  T
Q  207 gattcttaaacttaacaaacaaacctgataaagttcaagattttgaagtttagggcaatggtggagcacccgtacaactatattccaatcatagttgtgc 306  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  821214 gattcttaaacttaacaagcaaacctgataaagttcaagattttgaagcttagggcaatggtggagcacccatacaactatattccaatcatagttgtgc 821115  T
Q  307 accaaatgggtcaaattatgaaatgtaggaaagtcataataatagcgataaatctagtttatataaaaagataaag 382  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  821114 accaaatgggtcaaattatgaaatgtaggaaagtcataataatagcgataaatctagtttatataaaaagataaag 821039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 172 - 343
Target Start/End: Complemental strand, 410355 - 410184
Alignment:
Q  172 aataaaggtatgttaagaaaagataaatcaaataggattcttaaacttaacaaacaaacctgataaagttcaagattttgaagtttagggcaatggtgga 271  Q
    ||||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  410355 aataaaggtatgtcaagaaaagataaatcaaatatgattcttaaatttaacaaacaaacccgataaagttcaagattttgaagcttagggcaatggtgga 410256  T
Q  272 gcacccgtacaactatattccaatcatagttgtgcaccaaatgggtcaaattatgaaatgtaggaaagtcat 343  Q
    ||||  |||||||||||| ||  || ||||||  |||||||||| |||||||||| |||||||| |||||||    
T  410255 gcacttgtacaactatatccccgtcgtagttgatcaccaaatggatcaaattatggaatgtagggaagtcat 410184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 174 - 303
Target Start/End: Original strand, 965427 - 965561
Alignment:
Q  174 taaaggtatgttaagaaaagataaatcaaatag-----gattcttaaacttaacaaacaaacctgataaagttcaagattttgaagtttagggcaatggt 268  Q
    ||||||||||||||||||| ||||||||||| |     |||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |    
T  965427 taaaggtatgttaagaaaatataaatcaaatcgaatatgattgttaaatttaacaaacaaacctgataaagttcaagattttgaagcttagggcaatgat 965526  T
Q  269 ggagcacccgtacaactatattccaatcatagttg 303  Q
    |||||||  | |||||||||| |||||||||||||    
T  965527 ggagcacttgaacaactatatcccaatcatagttg 965561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 218 - 320
Target Start/End: Original strand, 982091 - 982193
Alignment:
Q  218 ttaacaaacaaacctgataaagttcaagattttgaagtttagggcaatggtggagcacccgtacaactatattccaatcatagttgtgcaccaaatgggt 317  Q
    |||||||||||||||||||||| |||||||||||||| |||  ||||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||    
T  982091 ttaacaaacaaacctgataaaggtcaagattttgaagcttaaagcaatggtggagcactcgtacaactatattccaatcatagttgagcaccaaatgagt 982190  T
Q  318 caa 320  Q
    |||    
T  982191 caa 982193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 186 - 343
Target Start/End: Complemental strand, 1403349 - 1403192
Alignment:
Q  186 aagaaaagataaatcaaataggattcttaaacttaacaaacaaacctgataaagttcaagattttgaagtttagggcaatggtggagcacccgtacaact 285  Q
    |||||||||||||||||||| | |||||| | |||| | ||| |||| |||||  |||||||||||||| ||||||||||||| ||||||  |||||| |    
T  1403349 aagaaaagataaatcaaataagtttcttatatttaagacacatacctcataaaagtcaagattttgaagcttagggcaatggtagagcacttgtacaatt 1403250  T
Q  286 atattccaatcatagttgtgcaccaaatgggtcaaattatgaaatgtaggaaagtcat 343  Q
    ||||  || | ||||||| |||||| ||| ||||||||||| ||||||||||||||||    
T  1403249 atatcacagttatagttgagcaccagatgagtcaaattatggaatgtaggaaagtcat 1403192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 20 - 106
Target Start/End: Original strand, 957858 - 957945
Alignment:
Q  20 tgattacattgttggcctgcaagtgcaaagtcc-gcatagtgcaagttgtaaggtttaatgaaacgcaacttggaacagatttcggat 106  Q
    ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||| ||||    
T  957858 tgattactttgttggcctgcaagtgcaaagtcccgcatagtgcaagttgtaaggtttaatgaaaggcaacttggaactgatttaggat 957945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 212 - 308
Target Start/End: Original strand, 974016 - 974112
Alignment:
Q  212 ttaaacttaacaaacaaacctgataaagttcaagattttgaagtttagggcaatggtggagcacccgtacaactatattccaatcatagttgtgcac 308  Q
    ||||| |||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||  | |||||||||| ||||||||||||| ||||    
T  974016 ttaaatttaacaaacaaacctgataaaggtcaagattttgaagcttagggcaatgatggagcacttgaacaactatatcccaatcatagttgagcac 974112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 8 - 106
Target Start/End: Original strand, 973776 - 973875
Alignment:
Q  8 gctaacataatgtgattacattgttggcctgcaagtgcaaagt-ccgcatagtgcaagttgtaaggtttaatgaaacgcaacttggaacagatttcggat 106  Q
    ||||||||||||||||||| |||||||||||||  |||||||| || |||||||||||||||||||||| ||| ||  |||||||||||| |||| ||||    
T  973776 gctaacataatgtgattacgttgttggcctgcatatgcaaagtcccacatagtgcaagttgtaaggtttgatgtaagacaacttggaacaaattttggat 973875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 235 - 343
Target Start/End: Complemental strand, 1399595 - 1399487
Alignment:
Q  235 taaagttcaagattttgaagtttagggcaatggtggagcacccgtacaactatattccaatcatagttgtgcaccaaatgggtcaaattatgaaatgtag 334  Q
    |||| ||||||||||||||| ||||||||||||||||||||  |||||| |||||  ||   ||||||| |||||| ||| ||||||||||| |||||||    
T  1399595 taaaattcaagattttgaagcttagggcaatggtggagcacttgtacaattatatcacagctatagttgagcaccagatgagtcaaattatggaatgtag 1399496  T
Q  335 gaaagtcat 343  Q
     ||||||||    
T  1399495 aaaagtcat 1399487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 8 - 96
Target Start/End: Original strand, 965211 - 965300
Alignment:
Q  8 gctaacataatgtgattacattgttggcctgcaagtgcaaagt-ccgcatagtgcaagttgtaaggtttaatgaaacgcaacttggaaca 96  Q
    |||| |||||||||||||| |||||||||||||  |||||||| || |||||||||||||||||||||| ||| ||  ||||||||||||    
T  965211 gctagcataatgtgattacgttgttggcctgcatatgcaaagtcccacatagtgcaagttgtaaggtttgatgtaagacaacttggaaca 965300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 189 - 274
Target Start/End: Complemental strand, 824966 - 824884
Alignment:
Q  189 aaaagataaatcaaataggattcttaaacttaacaaacaaacctgataaagttcaagattttgaagtttagggcaatggtggagca 274  Q
    |||||||||| |||||| |||||||||||||||   ||||||| |||||||||||||||| ||||| |||||| | ||||||||||    
T  824966 aaaagataaaccaaatacgattcttaaacttaa---acaaacccgataaagttcaagattctgaagcttagggaagtggtggagca 824884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 8 - 100
Target Start/End: Complemental strand, 1400093 - 1400003
Alignment:
Q  8 gctaacataatgtgattacattgttggcctgcaagtgcaaagt-ccgcatagtgcaagttgtaaggtttaatgaaacgcaacttggaacagatt 100  Q
    |||||||||||| |||||| |||||||||| ||    |||||| ||||||| ||||||||||||||||||||||||  ||||||||||||||||    
T  1400093 gctaacataatgcgattacgttgttggccttca---tcaaagtcccgcatattgcaagttgtaaggtttaatgaaagacaacttggaacagatt 1400003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 8 - 100
Target Start/End: Complemental strand, 1403814 - 1403721
Alignment:
Q  8 gctaacataatgtgattacattgttggcctgcaagtgcaaagtcc-gcatagtgcaagttgtaaggtttaatgaaacgcaacttggaacagatt 100  Q
    |||||||||||| ||||||  |||||| || |||   |||||||| ||||| |||||||||||||||||||||||| |||||||||||| ||||    
T  1403814 gctaacataatgcgattacggtgttggtctacaacaacaaagtcccgcatattgcaagttgtaaggtttaatgaaaggcaacttggaactgatt 1403721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 225 - 329
Target Start/End: Original strand, 989773 - 989877
Alignment:
Q  225 acaaacctgataaagttcaagattttgaagtttagggcaatggtggagcacccgtacaactatattccaatcatagttgtgcaccaaatgggtcaaatta 324  Q
    |||||||||||||||||  ||||||||||| |||||||| |||||||||||  |||| || | || ||||| || || | || |||| ||||||||||||    
T  989773 acaaacctgataaagttggagattttgaagcttagggcagtggtggagcacttgtactaccaaatcccaattattgtagagctccaagtgggtcaaatta 989872  T
Q  325 tgaaa 329  Q
    |||||    
T  989873 tgaaa 989877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 224 - 275
Target Start/End: Complemental strand, 963629 - 963578
Alignment:
Q  224 aacaaacctgataaagttcaagattttgaagtttagggcaatggtggagcac 275  Q
    |||||||||||||||| || |||||||||||||||||||| |||| ||||||    
T  963629 aacaaacctgataaagctcgagattttgaagtttagggcagtggtagagcac 963578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 96
Target Start/End: Complemental strand, 410558 - 410469
Alignment:
Q  8 gctaacataatgtgattacattgttggcctgcaagtgcaaagtcc-gcatagtgcaagttgtaaggtttaatgaaacgcaacttggaaca 96  Q
    |||||||||||||||  |  |||| ||||||||| ||| |||||| | ||||||||||||||||||||||| |||| ||||  |||||||    
T  410558 gctaacataatgtgacaatgttgtaggcctgcaaatgcgaagtcccgaatagtgcaagttgtaaggtttaacgaaaagcaaggtggaaca 410469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 226
Target Start/End: Original strand, 1024888 - 1024932
Alignment:
Q  182 tgttaagaaaagataaatcaaataggattcttaaacttaacaaac 226  Q
    |||||||||| |||||| |||||| ||||||||||||||||||||    
T  1024888 tgttaagaaatgataaaccaaatatgattcttaaacttaacaaac 1024932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 207 - 326
Target Start/End: Original strand, 10116747 - 10116866
Alignment:
Q  207 gattcttaaacttaacaaacaaacctgataaagttcaagattttgaagtttagggcaatggtggagcacccgtacaactatattccaatcatagttgtgc 306  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||||| ||||||||||  | ||    
T  10116747 gattgttaaatttaacaaacaaacctgataaagttcaagattttgaaggttagggcaatggtggagcacttgtacaactatatcccaatcatagaggagc 10116846  T
Q  307 accaaatgggtcaaattatg 326  Q
    |||||||| |||||||||||    
T  10116847 accaaatgagtcaaattatg 10116866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 96
Target Start/End: Original strand, 10116514 - 10116604
Alignment:
Q  7 agctaacataatgtgattacattgttggcctgcaagtgcaaagtcc-gcatagtgcaagttgtaaggtttaatgaaacgcaacttggaaca 96  Q
    ||||| ||||||||||| ||| ||| |||||| || | |||| ||| ||||||| ||||||||||||||| ||||||  |||| |||||||    
T  10116514 agctagcataatgtgataacactgtaggcctgaaaattcaaattcccgcatagtacaagttgtaaggtttgatgaaagacaacctggaaca 10116604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 189 - 344
Target Start/End: Original strand, 45810468 - 45810623
Alignment:
Q  189 aaaagataaatcaaataggattcttaaacttaacaaacaaacctgataaagttcaagattttgaagtttagggcaatggtggagcacccgtacaactata 288  Q
    |||| |||||||||||| |||  ||||| ||||||| |||||||||||||| || ||| ||||||| ||||| ||||| || |||||  |||||||||||    
T  45810468 aaaaaataaatcaaatatgatcgttaaatttaacaagcaaacctgataaaggtcgagactttgaagcttaggacaatgctgaagcacttgtacaactata 45810567  T
Q  289 ttccaatcatagttgtgcaccaaatgggtcaaattatgaaatgtaggaaagtcata 344  Q
    | |||||||||||||  ||||||||| ||||||||||  |||||||||||||||||    
T  45810568 tcccaatcatagttgaccaccaaatgagtcaaattattgaatgtaggaaagtcata 45810623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 8 - 108
Target Start/End: Original strand, 45810248 - 45810349
Alignment:
Q  8 gctaacataatgtgattacattgttggcctgcaagtgcaaagtcc-gcatagtgcaagttgtaaggtttaatgaaacgcaacttggaacagatttcggat 106  Q
    ||||||||||  ||||||| ||||  |||||||| |||||||||| ||||||||||||| || ||||||||||||| |||| ||||||||||||| ||||    
T  45810248 gctaacataacatgattacgttgtaagcctgcaaatgcaaagtcccgcatagtgcaagtcgtgaggtttaatgaaaggcaagttggaacagattttggat 45810347  T
Q  107 ag 108  Q
    ||    
T  45810348 ag 45810349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 226
Target Start/End: Complemental strand, 8312146 - 8312102
Alignment:
Q  182 tgttaagaaaagataaatcaaataggattcttaaacttaacaaac 226  Q
    |||||||||| |||||| |||||| |||| |||||||||||||||    
T  8312146 tgttaagaaatgataaaccaaatatgatttttaaacttaacaaac 8312102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 196 - 336
Target Start/End: Original strand, 1445999 - 1446139
Alignment:
Q  196 aaatcaaataggattcttaaacttaacaaacaaacctgataaagttcaagattttgaagtttagggcaatggtggagcacccgtacaactatattccaat 295  Q
    |||||||||| |||| ||||| |||| |||||||||||||||| ||||| ||||||||| ||||||||| ||| |||||| |||  |||||||  ||||     
T  1445999 aaatcaaatacgattgttaaaattaagaaacaaacctgataaaattcaatattttgaagcttagggcaaaggtagagcacacgttgaactataccccaac 1446098  T
Q  296 catagttgtgcaccaaatgggtcaaattatgaaatgtagga 336  Q
      ||| || |||||||||| ||||||||||| |||||||||    
T  1446099 tgtagctgagcaccaaatgagtcaaattatggaatgtagga 1446139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 195 - 337
Target Start/End: Complemental strand, 12105351 - 12105209
Alignment:
Q  195 taaatcaaataggattcttaaacttaacaaacaaacctgataaagttcaagattttgaagtttagggcaatggtggagcacccgtacaactatattccaa 294  Q
    ||||||||||| |||| ||||| |||| |||||||||||| |||| |||||||||||||| ||||| ||| |||| ||||  | |  |||||||| ||||    
T  12105351 taaatcaaatatgattgttaaatttaagaaacaaacctgaaaaaggtcaagattttgaagcttaggacaaaggtgcagcattcttggaactatatcccaa 12105252  T
Q  295 tcatagttgtgcaccaaatgggtcaaattatgaaatgtaggaa 337  Q
    | ||||  | |||||||||| ||||||||||| ||||||||||    
T  12105251 ttatagcagagcaccaaatgagtcaaattatggaatgtaggaa 12105209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 196 - 274
Target Start/End: Original strand, 1459312 - 1459390
Alignment:
Q  196 aaatcaaataggattcttaaacttaacaaacaaacctgataaagttcaagattttgaagtttagggcaatggtggagca 274  Q
    ||||||||||  ||| ||||| |||| |||||||||||||||||||||||| ||||||| || ||||||| ||||||||    
T  1459312 aaatcaaatataattgttaaaattaagaaacaaacctgataaagttcaagagtttgaagcttggggcaatcgtggagca 1459390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 106
Target Start/End: Complemental strand, 12105588 - 12105489
Alignment:
Q  8 gctaacataatgtgattacattgttggcctgcaagtgcaaagtc-cgcatagtgcaagttgtaaggtttaatgaaacgcaacttggaacagatttcggat 106  Q
    |||||||||||||||| ||  ||| ||||| ||| ||||||||| || || || |||||| |||||||| |||||| ||||| |||||||||||| ||||    
T  12105588 gctaacataatgtgataactctgtaggcctccaattgcaaagtcacggatcgtacaagttctaaggtttgatgaaaggcaacctggaacagattttggat 12105489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 101
Target Start/End: Original strand, 1459138 - 1459188
Alignment:
Q  51 ccgcatagtgcaagttgtaaggtttaatgaaacgcaacttggaacagattt 101  Q
    ||||| |||||||||||||||||||||| ||| ||||  ||||||||||||    
T  1459138 ccgcaaagtgcaagttgtaaggtttaataaaaggcaagatggaacagattt 1459188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 1333502 - 1333546
Alignment:
Q  224 aacaaacctgataaagttcaagattttgaagtttagggcaatggt 268  Q
    |||||||||||| |||||||||  ||||||| |||||||||||||    
T  1333502 aacaaacctgatcaagttcaagcctttgaagcttagggcaatggt 1333546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 28449797 - 28449841
Alignment:
Q  224 aacaaacctgataaagttcaagattttgaagtttagggcaatggt 268  Q
    |||||||||||||||| ||||| |||||||| ||||| |||||||    
T  28449797 aacaaacctgataaagctcaagcttttgaaggttaggacaatggt 28449841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 173 - 273
Target Start/End: Original strand, 48675436 - 48675532
Alignment:
Q  173 ataaaggtatgttaagaaaagataaatcaaataggattcttaaacttaacaaacaaacctgataaagttcaagattttgaagtttagggcaatggtggag 272  Q
    ||||||||||||||||||||||||||  |||||  ||||||||    ||  |||||||||||||||| || |||||||||||||||||||| ||||||||    
T  48675436 ataaaggtatgttaagaaaagataaactaaatacaattcttaa----aaagaacaaacctgataaagctcgagattttgaagtttagggcagtggtggag 48675531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 224 - 275
Target Start/End: Complemental strand, 36199164 - 36199113
Alignment:
Q  224 aacaaacctgataaagttcaagattttgaagtttagggcaatggtggagcac 275  Q
    |||||||||| |||||||||||| |||||||||||||||| ||||| |||||    
T  36199164 aacaaacctggtaaagttcaagaatttgaagtttagggcagtggtgaagcac 36199113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University