View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4717-Insertion-2 (Length: 875)
Name: NF4717-Insertion-2
Description: NF4717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4717-Insertion-2 |
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Alignment Details
Target: chr1 (Bit Score: 417; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 8 - 487
Target Start/End: Original strand, 51962292 - 51962768
Alignment:
| Q |
8 |
cacatctcctcaacttgctcactccatcttccctctcaaactcaactaaacaaatggaacaaatctcatcttcatctccgtctaaatcctcgaatcgcac |
107 |
Q |
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| T |
51962292 |
cacatctcctcaacttgctcactccatcttccctctcaaactcaactaaacaaatggaacaaatctcatcttcatctccgtctaaatcctcgaatcgcac |
51962391 |
T |
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| Q |
108 |
tgccggtaaggatggaatatctggaaattccatctctttggctgtacatttactttcataagaaaagaaaaacatgaggatgaggccaaatatgtttgca |
207 |
Q |
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| T |
51962392 |
tgccggtaaggatggaatatctggaaattccatctctttggctgtacatttactttcataagaaaagaaaaacatgaggatgaggccaaatatgtttgca |
51962491 |
T |
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| Q |
208 |
agtgacatcttgagttgcttcaatgggatgaaaacacatgtgtacaacacaattgtcactatccacaacctagattgacaaaccacaagacaattcatcc |
307 |
Q |
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| T |
51962492 |
agtgacatcttgagttgcttcaatgggatgaaaacacatgtgtacaacacaattgtcactatccacaacctagattgacaaaccacaagacaattcatcc |
51962591 |
T |
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| Q |
308 |
tcaactagctaggagtaatatattaacttatatcttaaaattgcaatgcaatgcctgaattaaaagcctctctacactctagatctgtgtctctgtgatg |
407 |
Q |
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| T |
51962592 |
tcaa----ctaggagtaatatattaacttatatcttaaaat-----tacaatgcctgaattaaaagcctctctacactctagatctgtgtctctgtgatg |
51962682 |
T |
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| Q |
408 |
atttgcttgcttttaatgac----tgattttgaactggcaatgtctatctatctatatat--acacacttttctatgagagatgac |
487 |
Q |
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| T |
51962683 |
atttgcttgcttttaatgacaatatgattttgaactggcaatgtctatctatctatatatacacacacttttctatgagagatgac |
51962768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 512 - 873
Target Start/End: Original strand, 51962783 - 51963146
Alignment:
| Q |
512 |
aaatatttgtatttgacacaccggccttatgcataaaataataatacaatacatgcatcctagattctttattattaattacaaaaataaaacttgttgt |
611 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51962783 |
aaatatttgtatttgacacaccggccttatgcataaaataataatacaatacatgcatcctagattctttattattaattacaaaaataaaacttgttgt |
51962882 |
T |
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| Q |
612 |
atacattagctctgacttcggaggctgct--tgcatgtagatagttttttaattgcatataggtcagctaaatatactctc-nnnnnnnccccttaacct |
708 |
Q |
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| T |
51962883 |
gtacattagctctgacttcggaggctgctaatgcatgtagatagttttttaattgcatataggtcagctaaatatactctctttttttcccccttaacct |
51962982 |
T |
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| Q |
709 |
tcatgttctcaattaaagaggtttccataattcagagttcgatcaaaaaataaatttggattttccgaaacaaattgtgttaaccgaaactcatcaataa |
808 |
Q |
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| T |
51962983 |
tcatgttctcaattaaagaggtttccataattcagagtttggtcaaaaaataaatttggattttccgaaacaaattgtgttaaccgaaactcatcaataa |
51963082 |
T |
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| Q |
809 |
cttgagttccaccacttgattagcggcatgggttaatattatattcaaaaagtttgaaattgata |
873 |
Q |
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| T |
51963083 |
cttgagttcaaccacttgattagcggcatgggttaatattatattc-aaaagtttgaaattgata |
51963146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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