View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4717-Insertion-3 (Length: 732)

Name: NF4717-Insertion-3
Description: NF4717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4717-Insertion-3
NF4717-Insertion-3
[»] chr6 (4 HSPs)
chr6 (485-732)||(14778047-14778294)
chr6 (10-198)||(14778617-14778802)
chr6 (201-385)||(14778397-14778562)
chr6 (578-661)||(1550941-1551024)
[»] chr3 (22 HSPs)
chr3 (201-401)||(43098754-43098954)
chr3 (10-201)||(43098498-43098694)
chr3 (583-732)||(49965764-49965911)
chr3 (300-391)||(16014799-16014890)
chr3 (485-544)||(43099039-43099097)
chr3 (618-730)||(14253584-14253697)
chr3 (658-731)||(18886581-18886652)
chr3 (321-401)||(8804888-8804968)
chr3 (321-401)||(8813288-8813368)
chr3 (644-726)||(15910748-15910830)
chr3 (658-731)||(18890824-18890895)
chr3 (658-731)||(18901007-18901078)
chr3 (583-643)||(8617237-8617296)
chr3 (321-401)||(15620973-15621053)
chr3 (321-401)||(15628334-15628414)
chr3 (321-401)||(18692184-18692264)
chr3 (321-401)||(18707554-18707634)
chr3 (691-726)||(15608906-15608941)
chr3 (660-730)||(4435245-4435313)
chr3 (660-730)||(4456036-4456104)
chr3 (583-641)||(8625109-8625166)
chr3 (660-730)||(30063298-30063366)
[»] scaffold0002 (5 HSPs)
scaffold0002 (10-201)||(361934-362125)
scaffold0002 (201-313)||(361762-361874)
scaffold0002 (525-567)||(361548-361590)
scaffold0002 (345-401)||(361702-361757)
scaffold0002 (660-730)||(122816-122884)
[»] chr7 (15 HSPs)
chr7 (568-678)||(20028736-20028848)
chr7 (304-378)||(34360732-34360805)
chr7 (644-732)||(17014645-17014731)
chr7 (536-607)||(15821879-15821950)
chr7 (273-380)||(19243212-19243321)
chr7 (591-719)||(36899800-36899926)
chr7 (535-725)||(3335142-3335340)
chr7 (542-635)||(39867990-39868079)
chr7 (631-728)||(34360404-34360500)
chr7 (536-606)||(35076499-35076570)
chr7 (522-606)||(35091005-35091091)
chr7 (542-616)||(19243019-19243093)
chr7 (647-719)||(3082450-3082520)
chr7 (578-661)||(15765351-15765434)
chr7 (684-732)||(39868107-39868154)
[»] scaffold0020 (3 HSPs)
scaffold0020 (542-670)||(105177-105307)
scaffold0020 (273-380)||(105585-105693)
scaffold0020 (695-732)||(105130-105167)
[»] chr5 (8 HSPs)
chr5 (273-380)||(22705175-22705283)
chr5 (553-730)||(22705534-22705698)
chr5 (321-400)||(18956360-18956438)
chr5 (691-730)||(33313073-33313112)
chr5 (691-727)||(33304061-33304097)
chr5 (646-730)||(22958293-22958375)
chr5 (583-641)||(5434333-5434390)
chr5 (583-641)||(5448149-5448206)
[»] chr1 (3 HSPs)
chr1 (307-400)||(28425935-28426027)
chr1 (633-732)||(39455778-39455874)
chr1 (632-725)||(44909084-44909174)
[»] chr4 (8 HSPs)
chr4 (633-726)||(25985992-25986082)
chr4 (658-732)||(27342173-27342245)
chr4 (658-732)||(44623377-44623449)
chr4 (321-401)||(13101415-13101495)
chr4 (690-732)||(23995174-23995216)
chr4 (667-730)||(11600214-11600275)
chr4 (679-725)||(40960383-40960428)
chr4 (658-726)||(19311480-19311549)
[»] scaffold0037 (1 HSPs)
scaffold0037 (578-722)||(77449-77589)
[»] scaffold0458 (1 HSPs)
scaffold0458 (633-732)||(7843-7939)
[»] chr2 (4 HSPs)
chr2 (320-374)||(41829119-41829173)
chr2 (304-377)||(17332591-17332666)
chr2 (618-679)||(45487887-45487949)
chr2 (633-679)||(12369171-12369216)
[»] chr8 (5 HSPs)
chr8 (321-398)||(24653961-24654036)
chr8 (618-713)||(15448762-15448856)
chr8 (500-607)||(23641020-23641124)
chr8 (536-606)||(24653804-24653871)
chr8 (631-679)||(23815244-23815291)
[»] scaffold0243 (2 HSPs)
scaffold0243 (273-370)||(22022-22120)
scaffold0243 (542-623)||(22245-22326)
[»] scaffold0473 (1 HSPs)
scaffold0473 (618-679)||(7658-7719)
[»] scaffold0138 (1 HSPs)
scaffold0138 (618-730)||(5710-5821)
[»] scaffold0422 (1 HSPs)
scaffold0422 (618-679)||(5101-5163)
[»] scaffold0503 (2 HSPs)
scaffold0503 (633-732)||(445-542)
scaffold0503 (633-732)||(5012-5109)


Alignment Details
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 485 - 732
Target Start/End: Complemental strand, 14778294 - 14778047
Alignment:
Q  485 ttattccacatattacatatttattttcggtcatttgttttattacatggatttagaatgtatatttaggcttaatgtaaatctatcttgcatatttgt- 583  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||     
T  14778294 ttattccacatattacatatttattttccgtcatttgttttattacatggatttagaatgtatatttacgcttaatgtaaatttatcttgcatatttgtt 14778195  T
Q  584 ttttcgcagactttagaatgtatatataggcttcatgtaaatcattcatgtgcgtgtgtg-gggtgtatgctttatttttatgcttcatagtttagggtt 682  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||| ||||||||||||||||||||||||| ||||    
T  14778194 ttttcgcagactttagaatgtatatataggcttcatgtaaatcattcatgtgtgcgtgtgtgggtgtatactttatttttatgcttcatagttta-ggtt 14778096  T
Q  683 aaaggtcttttgtggtgatccaacgtcaccacaaagtacctacgttttta 732  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  14778095 aaaggtc-tttgtggtgatccaacgtcaccacaaagtacctacgttttta 14778047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 10 - 198
Target Start/End: Complemental strand, 14778802 - 14778617
Alignment:
Q  10 tgattgagatcggttgtgttgctgcaattcaatacatgagtccgatttcaatttcatgttttgttattccatttaaattctattgctactacacatttat 109  Q
    ||||||||||||||||||||||||   |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14778802 tgattgagatcggttgtgttgctg---ttcaatccatgagtccaatttcaatttcatgttttgttattccatttaaattctattgctactacacatttat 14778706  T
Q  110 tttcattatgttcaactccaattctgttacacgtattctatagcatttcaattgagtgtttttggttgctattgtgtctctatttgtgt 198  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14778705 tttcattatgttcaattccaattctgttacacgtattctatagcatttcaattgagtgtttttggttgctattgtgtctctatttgtgt 14778617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 201 - 385
Target Start/End: Complemental strand, 14778562 - 14778397
Alignment:
Q  201 ttctcattattatggctgcaaggctgttctatttcaaattcaatttgcttagaattgatttctaaccgcagctattctttctatttaaagctttcatcat 300  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||                    | ||||||| ||||||    
T  14778562 ttctcattgttatggctgcaaggctgttctatttcaaattcaatttgcttagaattgatttctag-------------------tgaaagcttccatcat 14778482  T
Q  301 taacaggtgtttgtcatggctgttctattccattccaattgcaaggccgtggctgctctccaaagttaaagagattccatcataa 385  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  14778481 taacaggtgtttgccatagctgttctattccattccaattgcaaggcagtggctgctctccaaagttaaagagattccatcataa 14778397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 578 - 661
Target Start/End: Original strand, 1550941 - 1551024
Alignment:
Q  578 atttgtttttcgcagactttagaatgtatatataggcttcatgtaaatcattcatgtgcgtgtgtg-gggtgtatgctttatttt 661  Q
    |||| |||| ||||||| ||||||||||||  ||||||| ||||||||||| |||||| | ||||| | ||||||||||||||||    
T  1550941 atttattttccgcagaccttagaatgtata-gtaggcttaatgtaaatcatgcatgtgtgcgtgtgtgcgtgtatgctttatttt 1551024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 161; Significance: 2e-85; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 201 - 401
Target Start/End: Original strand, 43098754 - 43098954
Alignment:
Q  201 ttctcattattatggctgcaaggctgttctatttcaaattcaatttgcttagaattgatttctaaccgcagctattctttctatttaaagctttcatcat 300  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  43098754 ttctcattattatggctgcaaggctgttctattttaaattcaatttgctcagaattgatttctaaccgcagctattctttctagttaaagcttccatcat 43098853  T
Q  301 taacaggtgtttgtcatggctgttctattccattccaattgcaaggccgtggctgctctccaaagttaaagagattccatcataaagagaattggtggcc 400  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||  |||||||    
T  43098854 taacaggtgtttgccgtggctgttctattccattccaattgcaaggccgtaactgctctccaaagttaaagagattccatcataaagagaaccggtggcc 43098953  T
Q  401 c 401  Q
    |    
T  43098954 c 43098954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 10 - 201
Target Start/End: Original strand, 43098498 - 43098694
Alignment:
Q  10 tgattgagatcggttgtgttgctgcaattcaatacatgagtccgatttcaatttcatgttttgttattccatttaaattctattgctactacacatttat 109  Q
    |||||||| || ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43098498 tgattgagttcagttgtgttgctgcaattcaatccatgagtccaatttcaatttcatgttttgttattccatttaaattctattgctactacacatttat 43098597  T
Q  110 tttcattatgttcaactcca---attctgttacacgtattctatagcatttcaattgagtg--tttttggttgctattgtgtctctatttgtgtgct 201  Q
    ||||||||||||||| ||||   ||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||    
T  43098598 tttcattatgttcaattccaattattctgttacacgtattctatagcattccaattgagtgtttttttggttgctattgtgtctctatttgtgtgct 43098694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 583 - 732
Target Start/End: Complemental strand, 49965911 - 49965764
Alignment:
Q  583 tttttcgcagactttagaatgtatatataggcttcatgtaaatcattcatgtg--cgtgtgtggggtgtatgctttatttttatgcttcatagtttaggg 680  Q
    |||| |||| || |||||||||||| |||||||| ||||||||||| ||||||  |||||||| || |||||| |||||||||||||| ||| ||||||     
T  49965911 ttttccgcataccttagaatgtata-ataggcttaatgtaaatcatgcatgtgtgcgtgtgtgtgg-gtatgccttatttttatgctttataatttagg- 49965815  T
Q  681 ttaaaggtcttttgtggtgatccaacgtcaccacaaagtacctacgttttta 732  Q
    |||||||||||| ||||||||||||||||||||  |||||||||||||||||    
T  49965814 ttaaaggtcttt-gtggtgatccaacgtcaccatgaagtacctacgttttta 49965764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 300 - 391
Target Start/End: Original strand, 16014799 - 16014890
Alignment:
Q  300 ttaacaggtgtttgtcatggctgttctattccattccaattgcaaggccgtggctgctctccaaagttaaagagattccatcataaagagaa 391  Q
    |||||| |||| |||  |||||||||||||||||||||||||||||| |||  |||||||||||| ||||||||||||||||||||||||||    
T  16014799 ttaacatgtgtgtgttgtggctgttctattccattccaattgcaaggtcgtatctgctctccaaacttaaagagattccatcataaagagaa 16014890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 485 - 544
Target Start/End: Original strand, 43099039 - 43099097
Alignment:
Q  485 ttattccacatattacatatttattttcggtcatttgttttattacatggatttagaatg 544  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||    
T  43099039 ttattccacatattacatatttattttc-gtcatttgttttattacatagatttataatg 43099097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 618 - 730
Target Start/End: Original strand, 14253584 - 14253697
Alignment:
Q  618 atgtaaatcattcatgtgcgtgtgtg---gggtgtatgctttatttttatgcttcatagtttagggttaaaggtcttttgtggtgatccaacgtcaccac 714  Q
    ||||||| ||| |||||| |||||||   |||||||||||||||||||| | ||||||||||| ||| || ||||  |||||||| ||||| | |||||     
T  14253584 atgtaaaccatgcatgtgtgtgtgtgtgtgggtgtatgctttatttttacgtttcatagttta-ggtcaatggtc-cttgtggtggtccaatgccaccat 14253681  T
Q  715 aaagtacctacgtttt 730  Q
    ||||||||||||||||    
T  14253682 aaagtacctacgtttt 14253697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 658 - 731
Target Start/End: Complemental strand, 18886652 - 18886581
Alignment:
Q  658 tttttatgcttcatagtttagggttaaaggtcttttgtggtgatccaacgtcaccacaaagtacctacgttttt 731  Q
    ||||||||||| ||| |||||| |||||||||||| |||| |||||||||||||||  ||||||||||||||||    
T  18886652 tttttatgctttataatttagg-ttaaaggtcttt-gtggcgatccaacgtcaccatgaagtacctacgttttt 18886581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 321 - 401
Target Start/End: Original strand, 8804888 - 8804968
Alignment:
Q  321 tgttctattccattccaattgcaaggccgtggctgctctccaaagttaaagagattccatcataaagagaattggtggccc 401  Q
    |||||| || ||||||||| | ||||  |||||||| |||||||||||||||| || |||| ||||||||| |||||||||    
T  8804888 tgttctgtttcattccaatcggaaggttgtggctgcgctccaaagttaaagaggtttcatcgtaaagagaactggtggccc 8804968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 321 - 401
Target Start/End: Original strand, 8813288 - 8813368
Alignment:
Q  321 tgttctattccattccaattgcaaggccgtggctgctctccaaagttaaagagattccatcataaagagaattggtggccc 401  Q
    |||||| || ||||||||| | ||||  |||||||| |||||||||||||||| || |||| ||||||||| |||||||||    
T  8813288 tgttctgtttcattccaatcggaaggttgtggctgcgctccaaagttaaagaggtttcatcgtaaagagaactggtggccc 8813368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 644 - 726
Target Start/End: Original strand, 15910748 - 15910830
Alignment:
Q  644 gggtgtatgctttatttttatgcttcat--agtttagggttaaaggtcttttgtggtgatccaacgtcaccacaaagtacctacg 726  Q
    |||||||||||||||||||| ||||  |  |||||||||| |  ||||||| |||||||||||||||||| ||||||||||||||    
T  15910748 gggtgtatgctttatttttacgctttttttagtttagggt-agtggtcttt-gtggtgatccaacgtcactacaaagtacctacg 15910830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 658 - 731
Target Start/End: Complemental strand, 18890895 - 18890824
Alignment:
Q  658 tttttatgcttcatagtttagggttaaaggtcttttgtggtgatccaacgtcaccacaaagtacctacgttttt 731  Q
    ||||||| ||| ||| |||||| |||||||||||| |||| |||||||||||||||  ||||||||||||||||    
T  18890895 tttttattctttataatttagg-ttaaaggtcttt-gtggcgatccaacgtcaccatgaagtacctacgttttt 18890824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 658 - 731
Target Start/End: Complemental strand, 18901078 - 18901007
Alignment:
Q  658 tttttatgcttcatagtttagggttaaaggtcttttgtggtgatccaacgtcaccacaaagtacctacgttttt 731  Q
    ||||||| ||| ||| |||||| |||||||||||| |||| |||||||||||||||  ||||||||||||||||    
T  18901078 tttttattctttataatttagg-ttaaaggtcttt-gtggcgatccaacgtcaccatgaagtacctacgttttt 18901007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 583 - 643
Target Start/End: Original strand, 8617237 - 8617296
Alignment:
Q  583 tttttcgcagactttagaatgtatatataggcttcatgtaaatcattcatgtgcgtgtgtg 643  Q
    ||||| |||||||||||||||||| | ||||||| ||||||||||| |||||| |||||||    
T  8617237 ttttttgcagactttagaatgtattt-taggcttaatgtaaatcatgcatgtgtgtgtgtg 8617296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 321 - 401
Target Start/End: Original strand, 15620973 - 15621053
Alignment:
Q  321 tgttctattccattccaattgcaaggccgtggctgctctccaaagttaaagagattccatcataaagagaattggtggccc 401  Q
    |||||| |||||||||||| | ||||  |||||||| |||||||||||||||  || |||| |||||||||  ||||||||    
T  15620973 tgttctgttccattccaatcggaaggttgtggctgcgctccaaagttaaagatgtttcatcgtaaagagaaccggtggccc 15621053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 321 - 401
Target Start/End: Original strand, 15628334 - 15628414
Alignment:
Q  321 tgttctattccattccaattgcaaggccgtggctgctctccaaagttaaagagattccatcataaagagaattggtggccc 401  Q
    |||||| |||||||||||| | ||||  |||||||| |||||||||||||||  || |||| |||||||||  ||||||||    
T  15628334 tgttctgttccattccaatcggaaggttgtggctgcgctccaaagttaaagatgtttcatcgtaaagagaaccggtggccc 15628414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 321 - 401
Target Start/End: Original strand, 18692184 - 18692264
Alignment:
Q  321 tgttctattccattccaattgcaaggccgtggctgctctccaaagttaaagagattccatcataaagagaattggtggccc 401  Q
    |||||| |||||||||||| | ||||  |||||||| |||||||||||||||  || |||| |||||||||  ||||||||    
T  18692184 tgttctgttccattccaatcggaaggttgtggctgcgctccaaagttaaagatgtttcatcgtaaagagaaccggtggccc 18692264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 321 - 401
Target Start/End: Original strand, 18707554 - 18707634
Alignment:
Q  321 tgttctattccattccaattgcaaggccgtggctgctctccaaagttaaagagattccatcataaagagaattggtggccc 401  Q
    |||||| |||||||||||| | ||||  || ||||| |||||||||||||||| || |||| |||||||||  ||||||||    
T  18707554 tgttctgttccattccaatcggaaggttgtagctgcgctccaaagttaaagaggtttcatcgtaaagagaaccggtggccc 18707634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 691 - 726
Target Start/End: Complemental strand, 15608941 - 15608906
Alignment:
Q  691 tttgtggtgatccaacgtcaccacaaagtacctacg 726  Q
    ||||||||||||||||||||| ||||||||||||||    
T  15608941 tttgtggtgatccaacgtcactacaaagtacctacg 15608906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 660 - 730
Target Start/End: Original strand, 4435245 - 4435313
Alignment:
Q  660 tttatgcttcatagtttagggttaaaggtcttttgtggtgatccaacgtcaccacaaagtacctacgtttt 730  Q
    ||||||||| ||| |||||| ||| ||||||||  |||||||||||||||||||  |||||||||||||||    
T  4435245 tttatgctttataatttagg-ttataggtcttta-tggtgatccaacgtcaccatgaagtacctacgtttt 4435313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 660 - 730
Target Start/End: Original strand, 4456036 - 4456104
Alignment:
Q  660 tttatgcttcatagtttagggttaaaggtcttttgtggtgatccaacgtcaccacaaagtacctacgtttt 730  Q
    ||||||||| ||| |||||| ||| ||||||||  |||||||||||||||||||  |||||||||||||||    
T  4456036 tttatgctttataatttagg-ttataggtcttta-tggtgatccaacgtcaccatgaagtacctacgtttt 4456104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 583 - 641
Target Start/End: Original strand, 8625109 - 8625166
Alignment:
Q  583 tttttcgcagactttagaatgtatatataggcttcatgtaaatcattcatgtgcgtgtg 641  Q
    ||||| |||||||||||||||||| | ||||||| ||||||||||| |||||| |||||    
T  8625109 ttttttgcagactttagaatgtat-tttaggcttaatgtaaatcatgcatgtgtgtgtg 8625166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 660 - 730
Target Start/End: Complemental strand, 30063366 - 30063298
Alignment:
Q  660 tttatgcttcatagtttagggttaaaggtcttttgtggtgatccaacgtcaccacaaagtacctacgtttt 730  Q
    ||||||||| ||| |||||| ||||||||||||  |||||||||||| ||||||  |||||||||||||||    
T  30063366 tttatgctttataatttagg-ttaaaggtcttta-tggtgatccaacatcaccatgaagtacctacgtttt 30063298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 156; Significance: 2e-82; HSPs: 5)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 10 - 201
Target Start/End: Complemental strand, 362125 - 361934
Alignment:
Q  10 tgattgagatcggttgtgttgctgcaattcaatacatgagtccgatttcaatttcatgttttgttattccatttaaattctattgctactacacatttat 109  Q
    |||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  362125 tgattgagttcggttgtgttgctgcaattcaatccatgagtccaatttcaatttcatgttttgttattccatttaaattctattgctactacacatttat 362026  T
Q  110 tttcattatgttcaactccaattctgttacacgtattctatagcatttcaattgagtgtttttggttgctattgtgtctctatttgtgtgct 201  Q
    ||||||||||||||| ||||| |||||||||| |||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  362025 tttcattatgttcaattccaagtctgttacacatattctatagtattccaattgagtgtttttggttgctattgtatctctatttgtgtgct 361934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 201 - 313
Target Start/End: Complemental strand, 361874 - 361762
Alignment:
Q  201 ttctcattattatggctgcaaggctgttctatttcaaattcaatttgcttagaattgatttctaaccgcagctattctttctatttaaagctttcatcat 300  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||    
T  361874 ttctcattattatggctgcaaggttgttctatttcaaattcaatttgcttagaattgatttctaacggcagctattctttctagttaaagcttccatcat 361775  T
Q  301 taacaggtgtttg 313  Q
    |||||||||||||    
T  361774 taacaggtgtttg 361762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 525 - 567
Target Start/End: Complemental strand, 361590 - 361548
Alignment:
Q  525 tattacatggatttagaatgtatatttaggcttaatgtaaatc 567  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  361590 tattacatggatttagaatgtatatttaggcttaatgtaaatc 361548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 345 - 401
Target Start/End: Complemental strand, 361757 - 361702
Alignment:
Q  345 ggccgtggctgctctccaaagttaaagagattccatcataaagagaattggtggccc 401  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||  ||||||||    
T  361757 ggccgtggctgctctccaaagttaaa-agattccatcataaagagaaccggtggccc 361702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 660 - 730
Target Start/End: Original strand, 122816 - 122884
Alignment:
Q  660 tttatgcttcatagtttagggttaaaggtcttttgtggtgatccaacgtcaccacaaagtacctacgtttt 730  Q
    ||||||||| ||| |||||| ||||||||||||  |||||||||||||||||||  |||||||||||||||    
T  122816 tttatgctttataatttagg-ttaaaggtcttta-tggtgatccaacgtcaccatgaagtacctacgtttt 122884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 2e-35; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 568 - 678
Target Start/End: Original strand, 20028736 - 20028848
Alignment:
Q  568 tatcttgcatatttgtttt-tcgcagactttagaatgtatatataggcttcatgtaaatcattcatgtgcgtgtgtg-gggtgtatgctttatttttatg 665  Q
    |||||||||||||| |||| |||||||||||||||||||||||||||||  |||||||||||||||||| | ||||| ||||||||||||||||||||||    
T  20028736 tatcttgcatatttattttttcgcagactttagaatgtatatataggctaaatgtaaatcattcatgtgtgcgtgtgtgggtgtatgctttatttttatg 20028835  T
Q  666 cttcatagtttag 678  Q
    |||||||||||||    
T  20028836 cttcatagtttag 20028848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 304 - 378
Target Start/End: Complemental strand, 34360805 - 34360732
Alignment:
Q  304 caggtgtttgtcatggctgttctattccattccaattgcaaggccgtggctgctctccaaagttaaagagattcc 378  Q
    |||||||||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  34360805 caggtgtttgtcgtg-ctgttctattccattccaattgcaaggtcgtggctgctctccaaagttaaagagattcc 34360732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 644 - 732
Target Start/End: Complemental strand, 17014731 - 17014645
Alignment:
Q  644 gggtgtatgctttatttttatgcttcatagtttagggttaaaggtcttttgtggtgatccaacgtcaccacaaagtacctacgttttta 732  Q
    |||||||||||||||||||||||||  ||||||||||| || ||||||| |||||||||||||||||| |||||||||||||| |||||    
T  17014731 gggtgtatgctttatttttatgctttttagtttagggt-aatggtcttt-gtggtgatccaacgtcactacaaagtacctacgctttta 17014645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 536 - 607
Target Start/End: Original strand, 15821879 - 15821950
Alignment:
Q  536 tttagaatgtatatttaggcttaatgtaaatctatcttgcatatttgtttttcgcagactttagaatgtata 607  Q
    ||||||||||| ||||||| ||||||||||| |||| ||||||||| |||||||||||||||||||||||||    
T  15821879 tttagaatgtacatttagggttaatgtaaatttatcatgcatatttatttttcgcagactttagaatgtata 15821950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 273 - 380
Target Start/End: Complemental strand, 19243321 - 19243212
Alignment:
Q  273 tattctttctatttaaagctttcatcattaa-caggtgtttgtcatggctgttctattccattccaattgcaaggccgtggctgctctccaaagtt-aaa 370  Q
    |||||||| ||||||||| || ||||||||| || ||||| |   ||||||||||| ||||||||||||||||||| |||| |||||||||||||| |||    
T  19243321 tattctttttatttaaagtttccatcattaatcaagtgttcgcattggctgttctactccattccaattgcaaggctgtggttgctctccaaagttaaaa 19243222  T
Q  371 gagattccat 380  Q
    ||||||||||    
T  19243221 gagattccat 19243212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 591 - 719
Target Start/End: Original strand, 36899800 - 36899926
Alignment:
Q  591 agactttagaatgtatatataggcttcatgtaaatcattcatgtgcgtgtgtggg-gtgtatgctttatttttatgcttcatagtttagggttaaaggtc 689  Q
    ||||||||||||||||| ||| |||| ||||||||||| |||||||| | ||| | |||||||| | |||||||||||   ||||||||| |||| ||||    
T  36899800 agactttagaatgtata-atacgcttaatgtaaatcatgcatgtgcgcgcgtgtgtgtgtatgcctcatttttatgctctttagtttagg-ttaatggtc 36899897  T
Q  690 ttttgtggtgatccaacgtcaccacaaagt 719  Q
    ||| ||||||||||||| ||||||||||||    
T  36899898 ttt-gtggtgatccaacatcaccacaaagt 36899926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 535 - 725
Target Start/End: Complemental strand, 3335340 - 3335142
Alignment:
Q  535 atttagaatgtatatttaggcttaatgtaaatctatcttgcatatttgttt----ttcgcagactttagaatgtatatataggcttc-atgtaaatcatt 629  Q
    |||||||||||||||||||||||||||||||| |||  ||||||||| |||    ||||||| |||||||||||||  ||||||||  |||||| || ||    
T  3335340 atttagaatgtatatttaggcttaatgtaaatttatggtgcatatttatttatttttcgcaggctttagaatgtatc-ataggcttttatgtaa-tcgtt 3335243  T
Q  630 -------catgtgcgtgtgtg-gggtgtatgctttatttttatgcttcatagtttagggttaaaggtcttttgtggtgatccaacgtcaccacaaagtac 721  Q
           |||||| | ||||| ||||||||||||||||||||||||   ||||||||  |||| ||||||| ||| ||||||||||||||||||||||||    
T  3335242 gtaggggcatgtgtgcgtgtgtgggtgtatgctttatttttatgctctttagtttaga-ttaatggtcttt-gtg-tgatccaacgtcaccacaaagtac 3335146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 542 - 635
Target Start/End: Original strand, 39867990 - 39868079
Alignment:
Q  542 atgtatatttaggcttaatgtaaatctatcttgcatatttgtttttcgcagactttagaatgtatatataggcttcatgtaaatcattcatgtg 635  Q
    ||||||| |||| |||||||||||| |||| || |||||| |||| |    ||||||||||||||||||||| || ||||||||||||||||||    
T  39867990 atgtatacttagacttaatgtaaatttatcatgtatatttattttgc----actttagaatgtatatataggtttaatgtaaatcattcatgtg 39868079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 631 - 728
Target Start/End: Complemental strand, 34360500 - 34360404
Alignment:
Q  631 atgtgcgtgtgtggggtgtatgctttattttt-atgcttcatagtttagggttaaaggtcttttgtggtgatccaacgtca-ccacaaagtacctacgtt 728  Q
    |||||| |||||||| ||||||| |||||||| || |||||||||||||| |||||||||||| |||||||||||||| || ||||||||||||| ||||    
T  34360500 atgtgcatgtgtggg-tgtatgcgttattttttatacttcatagtttagg-ttaaaggtcttt-gtggtgatccaacgccacccacaaagtacctccgtt 34360404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 536 - 606
Target Start/End: Original strand, 35076499 - 35076570
Alignment:
Q  536 tttagaatgtatatttaggcttaatgtaaatctatcttgcatattt-gtttttcgcagactttagaatgtat 606  Q
    ||||||||||||||||||| ||||||||||| |||  || ||||||  ||||||||||||||||||||||||    
T  35076499 tttagaatgtatatttagggttaatgtaaatttatgatgtatatttattttttcgcagactttagaatgtat 35076570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 522 - 606
Target Start/End: Original strand, 35091005 - 35091091
Alignment:
Q  522 ttttattacatggattt-agaatgtatatttaggcttaatgtaaatctatcttgcatattt-gtttttcgcagactttagaatgtat 606  Q
    ||||||| ||||||||| | |||||||||||||  ||||||||||| |||| |||||||||  ||||||||||| ||||||||||||    
T  35091005 ttttattgcatggattttataatgtatatttagcattaatgtaaatttatcatgcatatttattttttcgcagattttagaatgtat 35091091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 542 - 616
Target Start/End: Complemental strand, 19243093 - 19243019
Alignment:
Q  542 atgtatatttaggcttaatgtaaatctatcttgcatatttgtttt-tcgcagactttagaatgtatatataggctt 616  Q
    ||||||| ||||||||||||||||| |||| ||||||||| ||||  | |||||||||||||||||| ||||||||    
T  19243093 atgtatacttaggcttaatgtaaatttatcatgcatatttattttgccacagactttagaatgtata-ataggctt 19243019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 647 - 719
Target Start/End: Original strand, 3082450 - 3082520
Alignment:
Q  647 tgtatgctttatttttatgcttcatagtttagggttaaaggtcttttgtggtgatccaacgtcaccacaaagt 719  Q
    ||||||| |||||||||||||  |||||||| | ||||||||||||  |||||||||| ||||||||||||||    
T  3082450 tgtatgccttatttttatgctctatagtttacg-ttaaaggtcttta-tggtgatccatcgtcaccacaaagt 3082520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 578 - 661
Target Start/End: Complemental strand, 15765434 - 15765351
Alignment:
Q  578 atttgtttttcgcagactttagaatgtatatataggcttcatgtaaatcattcatgtgcgtgtgtg-gggtgtatgctttatttt 661  Q
    |||| |||| ||||||| ||||||||||||  ||||||| ||||||||||| |||||| | ||||| | ||||||||||||||||    
T  15765434 atttattttccgcagaccttagaatgtatag-taggcttaatgtaaatcatgcatgtgtgcgtgtgtgcgtgtatgctttatttt 15765351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 684 - 732
Target Start/End: Original strand, 39868107 - 39868154
Alignment:
Q  684 aaggtcttttgtggtgatccaacgtcaccacaaagtacctacgttttta 732  Q
    ||||||||| ||||||||||||||||||  |||||||||||||||||||    
T  39868107 aaggtcttt-gtggtgatccaacgtcactccaaagtacctacgttttta 39868154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 71; Significance: 9e-32; HSPs: 3)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 542 - 670
Target Start/End: Complemental strand, 105307 - 105177
Alignment:
Q  542 atgtatatttaggcttaatgtaaatctatcttgcatatttgtttttc-gcagactttagaatgtatatataggcttcatgtaaatcattcatgtgcgtgt 640  Q
    ||||||| ||||||||||||||||| |||| ||||||||| |||| | ||||||||||||||||||||||||| ||  ||||||||||||||||| | ||    
T  105307 atgtatacttaggcttaatgtaaatttatcatgcatatttattttgccgcagactttagaatgtatatataggtttattgtaaatcattcatgtgtgcgt 105208  T
Q  641 gtg-gggtgtatgctttatttttatgcttca 670  Q
    ||| |||||||||||||||||||||| ||||    
T  105207 gtgtgggtgtatgctttatttttatgtttca 105177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 273 - 380
Target Start/End: Complemental strand, 105693 - 105585
Alignment:
Q  273 tattctttctatttaaagctttcatcattaa-caggtgtttgtcatggctgttctattccattccaattgcaaggccgtggctgctctccaaagttaaag 371  Q
    |||||||| ||||||||| || ||||||||| || ||||| |   ||| ||||||| ||||||||||||||||||| |||| ||||||||||||||||||    
T  105693 tattctttttatttaaagtttccatcattaatcaagtgttcgcgttggatgttctactccattccaattgcaaggctgtggttgctctccaaagttaaag 105594  T
Q  372 agattccat 380  Q
    |||||||||    
T  105593 agattccat 105585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 695 - 732
Target Start/End: Complemental strand, 105167 - 105130
Alignment:
Q  695 tggtgatccaacgtcaccacaaagtacctacgttttta 732  Q
    ||||||||||| |||||| |||||||||||||||||||    
T  105167 tggtgatccaatgtcaccgcaaagtacctacgttttta 105130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 3e-28; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 273 - 380
Target Start/End: Original strand, 22705175 - 22705283
Alignment:
Q  273 tattctttctatttaaagctttcatcattaa-caggtgtttgtcatggctgttctattccattccaattgcaaggccgtggctgctctccaaagttaaag 371  Q
    |||||||| ||||||||| |||||||||||| || ||||| ||  ||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||    
T  22705175 tattctttttatttaaagttttcatcattaatcaagtgttcgtgttggctgttctactccattccaattgcaaggctgtggttgctctccaaagttaaag 22705274  T
Q  372 agattccat 380  Q
    |||||||||    
T  22705275 agattccat 22705283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 553 - 730
Target Start/End: Original strand, 22705534 - 22705698
Alignment:
Q  553 ggcttaatgtaaatctatcttgcatatttgttttt-cgcagactttagaatgtatatataggcttcatgtaaatcattcatgtgcgtgtgtg-gggtgta 650  Q
    |||||||||||||| |||| ||||||||| ||||  ||||||||||||||||||||||||| |||  ||||||||||||||||| | ||||| |||| ||    
T  22705534 ggcttaatgtaaatttatcatgcatatttattttggcgcagactttagaatgtatatatagacttattgtaaatcattcatgtgtgcgtgtgtgggtata 22705633  T
Q  651 tgctttatttttatgcttcatagtttagggttaaaggtcttttgtggtgatccaacgtcaccacaaagtacctacgtttt 730  Q
    |||||||||||||||||||              |||||| |||||||||||||||||||||| |||||||||||||||||    
T  22705634 tgctttatttttatgcttc--------------aaggtc-tttgtggtgatccaacgtcaccgcaaagtacctacgtttt 22705698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 321 - 400
Target Start/End: Original strand, 18956360 - 18956438
Alignment:
Q  321 tgttctattccattccaattgcaaggccgtggctgctctccaaagttaaagagattccatcataaagagaattggtggcc 400  Q
    |||||| |||||||||||| | ||||| ||||||||||||||||||||||||| ||||||| ||||||||| ||||||||    
T  18956360 tgttctgttccattccaatcggaaggctgtggctgctctccaaagttaaagag-ttccatcgtaaagagaactggtggcc 18956438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 691 - 730
Target Start/End: Complemental strand, 33313112 - 33313073
Alignment:
Q  691 tttgtggtgatccaacgtcaccacaaagtacctacgtttt 730  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  33313112 tttgtggtgatccaacgtcaccacaaagtacctacgtttt 33313073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 691 - 727
Target Start/End: Original strand, 33304061 - 33304097
Alignment:
Q  691 tttgtggtgatccaacgtcaccacaaagtacctacgt 727  Q
    |||||||||||||||||||||||||||||||||||||    
T  33304061 tttgtggtgatccaacgtcaccacaaagtacctacgt 33304097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 646 - 730
Target Start/End: Complemental strand, 22958375 - 22958293
Alignment:
Q  646 gtgtatgctttatttttatgcttcatagtttagggttaaaggtcttttgtggtgatccaacgtcaccacaaagtacctacgtttt 730  Q
    |||| ||| ||||||||||| |   ||||||||| |||||||||||| |||| |||||||| ||| |||||||||||||||||||    
T  22958375 gtgtttgccttatttttatgttctctagtttagg-ttaaaggtcttt-gtggcgatccaacatcatcacaaagtacctacgtttt 22958293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 583 - 641
Target Start/End: Complemental strand, 5434390 - 5434333
Alignment:
Q  583 tttttcgcagactttagaatgtatatataggcttcatgtaaatcattcatgtgcgtgtg 641  Q
    ||||| |||||||||||||||||| | ||||||| ||||||||||| |||||| |||||    
T  5434390 ttttttgcagactttagaatgtattt-taggcttaatgtaaatcatgcatgtgtgtgtg 5434333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 583 - 641
Target Start/End: Complemental strand, 5448206 - 5448149
Alignment:
Q  583 tttttcgcagactttagaatgtatatataggcttcatgtaaatcattcatgtgcgtgtg 641  Q
    ||||| |||||||||||||||||| | ||||||| ||||||||||| |||||| |||||    
T  5448206 ttttttgcagactttagaatgtattt-taggcttaatgtaaatcatgcatgtgtgtgtg 5448149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 5e-24; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 307 - 400
Target Start/End: Original strand, 28425935 - 28426027
Alignment:
Q  307 gtgtttgtcatggctgttctattccattccaattgcaaggccgtggctgctctccaaagttaaagagattccatcataaagagaattggtggcc 400  Q
    ||||||| | ||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||| |||||||||||||||  |||||||    
T  28425935 gtgtttgccgtggctgttctattccattccaattgcaaggcggtggctgctctccgaagttaaa-agatcccatcataaagagaaccggtggcc 28426027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 633 - 732
Target Start/End: Original strand, 39455778 - 39455874
Alignment:
Q  633 gtgcgtgtgtggggtgtatgctttatttttatgcttcatagtttagggttaaaggtcttttgtggtgatccaacgtcaccacaaagtacctacgttttta 732  Q
    ||||||||||||| ||||||||||||||||||||||  ||||||| ||| || ||||||| |||||||||||||||||| |||||||||||||| |||||    
T  39455778 gtgcgtgtgtggg-tgtatgctttatttttatgctttttagtttacggt-aatggtcttt-gtggtgatccaacgtcactacaaagtacctacgctttta 39455874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 632 - 725
Target Start/End: Complemental strand, 44909174 - 44909084
Alignment:
Q  632 tgtgcgtgtgtggggtgtatgctttatttttatgcttcatagtttagggttaaaggtcttttgtggtgatccaacgtcaccacaaagtacctac 725  Q
    |||||||||||| | ||||| ||||||||||||| |   ||||||||| |||| ||||||| ||||||||||||||||  |||||||| |||||    
T  44909174 tgtgcgtgtgtgtg-tgtattctttatttttatgttctttagtttagg-ttaatggtcttt-gtggtgatccaacgtcctcacaaagtgcctac 44909084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 1e-21; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 633 - 726
Target Start/End: Original strand, 25985992 - 25986082
Alignment:
Q  633 gtgcgtgtgtggggtgtatgctttatttttatgcttcatagtttagggttaaaggtcttttgtggtgatccaacgtcaccacaaagtacctacg 726  Q
    ||||||||||||| ||||||||||||||||||||||  ||||||||||| || ||||||| |||||||||||||||||| ||||||||||||||    
T  25985992 gtgcgtgtgtggg-tgtatgctttatttttatgctttttagtttagggt-aatggtcttt-gtggtgatccaacgtcactacaaagtacctacg 25986082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 658 - 732
Target Start/End: Complemental strand, 27342245 - 27342173
Alignment:
Q  658 tttttatgcttcatagtttagggttaaaggtcttttgtggtgatccaacgtcaccacaaagtacctacgttttta 732  Q
    ||||||||||| ||| |||||| |||||||||||| ||||||||||||||||||||  |||||||||||||||||    
T  27342245 tttttatgctttataatttagg-ttaaaggtcttt-gtggtgatccaacgtcaccatgaagtacctacgttttta 27342173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 658 - 732
Target Start/End: Original strand, 44623377 - 44623449
Alignment:
Q  658 tttttatgcttcatagtttagggttaaaggtcttttgtggtgatccaacgtcaccacaaagtacctacgttttta 732  Q
    ||||||||||| ||| |||||| |||||||||||| ||||||||||||||||||||  |||||||||||||||||    
T  44623377 tttttatgctttataatttagg-ttaaaggtcttt-gtggtgatccaacgtcaccatgaagtacctacgttttta 44623449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 321 - 401
Target Start/End: Original strand, 13101415 - 13101495
Alignment:
Q  321 tgttctattccattccaattgcaaggccgtggctgctctccaaagttaaagagattccatcataaagagaattggtggccc 401  Q
    |||||| || ||||||||| | ||||  |||||||| |||||||||||||||| || |||| ||||||||| |||||||||    
T  13101415 tgttctgtttcattccaatcggaaggttgtggctgcgctccaaagttaaagaggtttcatcgtaaagagaactggtggccc 13101495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 690 - 732
Target Start/End: Complemental strand, 23995216 - 23995174
Alignment:
Q  690 ttttgtggtgatccaacgtcaccacaaagtacctacgttttta 732  Q
    |||||||||||||||||||||||||||| |||||||| |||||    
T  23995216 ttttgtggtgatccaacgtcaccacaaaatacctacgctttta 23995174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 667 - 730
Target Start/End: Complemental strand, 11600275 - 11600214
Alignment:
Q  667 ttcatagtttagggttaaaggtcttttgtggtgatccaacgtcaccacaaagtacctacgtttt 730  Q
    ||||||||||||| |||||| | |||||||||||||||||||||||| ||| ||| ||||||||    
T  11600275 ttcatagtttagg-ttaaagat-ttttgtggtgatccaacgtcaccataaaatacatacgtttt 11600214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 679 - 725
Target Start/End: Complemental strand, 40960428 - 40960383
Alignment:
Q  679 ggttaaaggtcttttgtggtgatccaacgtcaccacaaagtacctac 725  Q
    |||||||||| |||||||||||||||||||| ||||||| |||||||    
T  40960428 ggttaaaggt-ttttgtggtgatccaacgtcgccacaaaatacctac 40960383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 658 - 726
Target Start/End: Complemental strand, 19311549 - 19311480
Alignment:
Q  658 tttttatgcttcatagtttag---ggttaaaggtcttttgtggtgatccaacgtcaccacaaagtacctacg 726  Q
    |||||||||||| ||||||||   |||||||||| |||||| ||||||||||||||| ||||| ||||||||    
T  19311549 tttttatgcttc-tagtttagttaggttaaaggt-ttttgtagtgatccaacgtcactacaaaatacctacg 19311480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 578 - 722
Target Start/End: Complemental strand, 77589 - 77449
Alignment:
Q  578 atttgtttttcgcagactttagaatgtatatataggcttcatgtaaatcattcatgtgcgtgtgtggggtgtatgctttatttttatgcttcatagttta 677  Q
    |||| |||| || |||| ||||||||||||  ||||||| ||||||||||| |||||| | | ||| | ||||||| |||| ||||||||  ||||||||    
T  77589 atttattttccgtagaccttagaatgtatag-taggcttaatgtaaatcatgcatgtgtgcgggtgtg-tgtatgccttatgtttatgctctatagttta 77492  T
Q  678 gggttaaaggtcttttgtggtgatccaacgtcaccacaaagtacc 722  Q
    || |||||||||||| |||||||||||||||||||||||||||||    
T  77491 gg-ttaaaggtcttt-gtggtgatccaacgtcaccacaaagtacc 77449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0458 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0458
Description:

Target: scaffold0458; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 633 - 732
Target Start/End: Complemental strand, 7939 - 7843
Alignment:
Q  633 gtgcgtgtgtggggtgtatgctttatttttatgcttcatagtttagggttaaaggtcttttgtggtgatccaacgtcaccacaaagtacctacgttttta 732  Q
    ||||||||||||| ||||||||||||||||||||||  ||||||| ||| || ||||||| |||||||||||||||||| |||||||||||||| |||||    
T  7939 gtgcgtgtgtggg-tgtatgctttatttttatgctttttagtttacggt-aatggtcttt-gtggtgatccaacgtcactacaaagtacctacgctttta 7843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 2e-17; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 320 - 374
Target Start/End: Complemental strand, 41829173 - 41829119
Alignment:
Q  320 ctgttctattccattccaattgcaaggccgtggctgctctccaaagttaaagaga 374  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  41829173 ctgttctattccattccaattgcaaggcagtggctgctctccaaagttaatgaga 41829119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 304 - 377
Target Start/End: Complemental strand, 17332666 - 17332591
Alignment:
Q  304 caggtgtttgtcatggctgttctattccattccaattgc---aaggccgtggctgctctccaaagttaaagagattc 377  Q
    |||||||||||| || |||||||||||||||||||||||   |||| |||||||||||| |||| | ||||||||||    
T  17332666 caggtgtttgtcgtg-ctgttctattccattccaattgcaagaaggtcgtggctgctcttcaaattaaaagagattc 17332591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 618 - 679
Target Start/End: Complemental strand, 45487949 - 45487887
Alignment:
Q  618 atgtaaatcattcatgtgcgtgtgtg-gggtgtatgctttatttttatgcttcatagtttagg 679  Q
    ||||||||||| |||||| | | ||| |||||||||||||||||||||| |||||||||||||    
T  45487949 atgtaaatcatgcatgtgtgcgagtgtgggtgtatgctttatttttatgtttcatagtttagg 45487887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 633 - 679
Target Start/End: Complemental strand, 12369216 - 12369171
Alignment:
Q  633 gtgcgtgtgtggggtgtatgctttatttttatgcttcatagtttagg 679  Q
    ||||||||||||| ||||||||||||||||||||||  |||||||||    
T  12369216 gtgcgtgtgtggg-tgtatgctttatttttatgctttttagtttagg 12369171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 7e-17; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 321 - 398
Target Start/End: Complemental strand, 24654036 - 24653961
Alignment:
Q  321 tgttctattccattccaattgcaaggccgtggctgctctccaaagttaaagagattccatcataaagagaattggtgg 398  Q
    ||||||||||||||||||| | ||||| |||||||||||||||||||||| |||||||||||| ||||||| ||||||    
T  24654036 tgttctattccattccaatcggaaggctgtggctgctctccaaagttaaa-agattccatcat-aagagaactggtgg 24653961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 618 - 713
Target Start/End: Complemental strand, 15448856 - 15448762
Alignment:
Q  618 atgtaaatcattcatgtgcgtgtgtg-gggtgtatgctttatttttatgcttcatagtttagggttaaaggtcttttgtggtgatccaacgtcacca 713  Q
    ||||||||||| |||||| | ||||| |||||||||||||||||||||| ||||||||||| ||| || ||||  |||||||| |||||||||||||    
T  15448856 atgtaaatcatgcatgtgtgcgtgtgtgggtgtatgctttatttttatgtttcatagttta-ggtcaatggtc-cttgtggtggtccaacgtcacca 15448762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 500 - 607
Target Start/End: Complemental strand, 23641124 - 23641020
Alignment:
Q  500 catatttattttcggtcatttgttttattacatggatttagaatgtatatttaggcttaatgtaaatctatcttgcatatttgtttttcgcagactttag 599  Q
    ||||||||||||  ||||||| |||||  ||| |  ||||||||||| ||||||| ||||||||||| |||| ||||||||| ||||||||| || ||||    
T  23641124 catatttatttt--gtcatttattttacaacaagattttagaatgtacatttagggttaatgtaaatttatcatgcatatttatttttcgca-acattag 23641028  T
Q  600 aatgtata 607  Q
    ||||||||    
T  23641027 aatgtata 23641020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 536 - 606
Target Start/End: Complemental strand, 24653871 - 24653804
Alignment:
Q  536 tttagaatgtatatttaggcttaatgtaaatctatcttgcatatttgttttt-cgcagactttagaatgtat 606  Q
    ||||||||||||||||||| ||||||||||| ||   ||||||||| ||||| |||||||||||||||||||    
T  24653871 tttagaatgtatatttaggattaatgtaaat-ta---tgcatatttatttttccgcagactttagaatgtat 24653804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 631 - 679
Target Start/End: Complemental strand, 23815291 - 23815244
Alignment:
Q  631 atgtgcgtgtgtggggtgtatgctttatttttatgcttcatagtttagg 679  Q
    ||||||||||||||| || |||||||||||||||| |||||||||||||    
T  23815291 atgtgcgtgtgtggg-tgcatgctttatttttatgtttcatagtttagg 23815244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0243 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 2)
Name: scaffold0243
Description:

Target: scaffold0243; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 273 - 370
Target Start/End: Original strand, 22022 - 22120
Alignment:
Q  273 tattctttctatttaaagctttcatcattaa-caggtgtttgtcatggctgttctattccattccaattgcaaggccgtggctgctctccaaagttaaa 370  Q
    |||||||| ||||||||| || ||||||||| || ||||| |   ||||||||||| ||||||||||||||||||| |||| ||||||||||| |||||    
T  22022 tattctttttatttaaagtttccatcattaatcaagtgttcgcattggctgttctactccattccaattgcaaggctgtggttgctctccaaaattaaa 22120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0243; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 542 - 623
Target Start/End: Original strand, 22245 - 22326
Alignment:
Q  542 atgtatatttaggcttaatgtaaatctatcttgcatatttgtttt-tcgcagactttagaatgtatatataggcttcatgtaa 623  Q
    ||||||| ||||||||||||||||| |||| ||||||||| ||||  |||||||||||||||||||| |||||||| ||||||    
T  22245 atgtatacttaggcttaatgtaaatttatcatgcatatttattttgccgcagactttagaatgtata-ataggcttaatgtaa 22326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0473 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0473
Description:

Target: scaffold0473; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 618 - 679
Target Start/End: Complemental strand, 7719 - 7658
Alignment:
Q  618 atgtaaatcattcatgtgcgtgtgtggggtgtatgctttatttttatgcttcatagtttagg 679  Q
    ||||||||||| |||||| | ||||| ||||||||||||||||||||| |||||||||||||    
T  7719 atgtaaatcatgcatgtgtgcgtgtgtggtgtatgctttatttttatgtttcatagtttagg 7658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 618 - 730
Target Start/End: Original strand, 5710 - 5821
Alignment:
Q  618 atgtaaatcattcatgtgcgtgtgtg-gggtgtatgctttatttttatgcttcatagtttagggttaaaggtcttttgtggtgatccaacgtcaccacaa 716  Q
    ||||||||||| |||||| | ||||| |||||||||||||||||||||| ||||||||||| ||| || ||||  |||||||| ||||||| ||||| ||    
T  5710 atgtaaatcatgcatgtgtgcgtgtgtgggtgtatgctttatttttatgtttcatagttta-ggtcaatggtc-cttgtggtggtccaacgccaccataa 5807  T
Q  717 agtacctacgtttt 730  Q
     ||| |||||||||    
T  5808 ggtatctacgtttt 5821  T

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Target: scaffold0422 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0422
Description:

Target: scaffold0422; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 618 - 679
Target Start/End: Complemental strand, 5163 - 5101
Alignment:
Q  618 atgtaaatcattcatgtgcgtgtgtg-gggtgtatgctttatttttatgcttcatagtttagg 679  Q
    ||||||||||| |||||| | ||||| |||||||||||||||||||||| |||||||||||||    
T  5163 atgtaaatcatgcatgtgtgcgtgtgtgggtgtatgctttatttttatgtttcatagtttagg 5101  T

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Target: scaffold0503 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0503
Description:

Target: scaffold0503; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 633 - 732
Target Start/End: Complemental strand, 542 - 445
Alignment:
Q  633 gtgcgtgtgtggggtgtatgctttatttttatgcttcat-agtttagggttaaaggtcttttgtggtgatccaacgtcaccacaaagtacctacgttttt 731  Q
    ||||||||||||  ||||||||||||||||||||||  | |||||| | | || ||||||| |||||||||||||||||| |||||||||||||| ||||    
T  542 gtgcgtgtgtggc-tgtatgctttatttttatgcttttttagtttaagat-aatggtcttt-gtggtgatccaacgtcactacaaagtacctacgctttt 446  T

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Target: scaffold0503; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 633 - 732
Target Start/End: Complemental strand, 5109 - 5012
Alignment:
Q  633 gtgcgtgtgtggggtgtatgctttatttttatgcttcat-agtttagggttaaaggtcttttgtggtgatccaacgtcaccacaaagtacctacgttttt 731  Q
    ||||||||||||  ||||||||||||||||||||||  | |||||| | | || ||||||| |||||||||||||||||| |||||||||||||| ||||    
T  5109 gtgcgtgtgtggc-tgtatgctttatttttatgcttttttagtttaagat-aatggtcttt-gtggtgatccaacgtcactacaaagtacctacgctttt 5013  T

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